FC876615

Overview
NameFC876615
Unique NameFC876615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10447 contig Ccv1_Contig10447:4..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.015e-84
Identity = 169/234 (72.22%), Postives = 188/234 (80.34%), Query Frame = 1
Query:   94 MAAKSQIVTGF-TMPMTPAPXXXXXXXXXXLCMVKKPLTTSFFNGG-VGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMFG 789
            M  K QI +G  + P+ P+             ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMRQATAQVLASQKRLENKYKAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++LKAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEM G
Sbjct:    1 MTTKFQIFSGLPSAPLQPSSS-----------LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSLKAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLG 217          

HSP 2 Score: 32.3426 bits (72), Expect = 6.015e-84
Identity = 16/20 (80.00%), Postives = 17/20 (85.00%), Query Frame = 2
Query:  770 K*ARCLGNVNTSSALSAFEK 829
            K +  LGNVNTSSALSAFEK
Sbjct:  211 KVSEMLGNVNTSSALSAFEK 230          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 8.577e-77
Identity = 154/233 (66.09%), Postives = 180/233 (77.25%), Query Frame = 1
Query:   94 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMFG 789
            MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMRQATAQVLASQK+L+NKYKAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA ALK QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM G
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIG 228          

HSP 2 Score: 27.335 bits (59), Expect = 8.577e-77
Identity = 12/15 (80.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  785 LGNVNTSSALSAFEK 829
            +G VNTS ALSAFEK
Sbjct:  227 IGTVNTSGALSAFEK 241          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.593e-73
Identity = 149/196 (76.02%), Postives = 167/196 (85.20%), Query Frame = 1
Query:  202 LTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMFG 789
            L TSF NG V +L++ ++R +  +R  C          R NL DR +RVVKSYANA+LSSFEDPEKIL+QAVLEMNDDL KMRQATAQVLASQKRLENKYKAAEQAS+DWYR+AQLALQKG+EDLAREALKRRKSYADNA++LKAQLDQQK VV NLVSNTR+LESKI EA+ KKDTLKARAQSAKT+TKVSEM G
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLAREALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKARAQSAKTSTKVSEMLG 214          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.477e-36
Identity = 76/157 (48.41%), Postives = 109/157 (69.43%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMFG 789
            M LFDRL RVV++  N ++S  EDPEK+LEQAV++M +DLV++RQA A+ +A +KR E +     Q ++ W  +A+LAL  GEE+LAREAL R+KS  D A A + QL QQ+ +  NL  N   LE+KI EA++KK+ L+ARA++AK   ++ +  G
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLALTNGEENLAREALARKKSLTDTAAAYQTQLAQQRTMSENLRRNLAALEAKISEAKTKKNMLQARAKAAKANAELQQTLG 157          

HSP 2 Score: 23.0978 bits (48), Expect = 8.477e-36
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  785 LGNVNTSSALSAFEK 829
            LG + TSSA SAFE+
Sbjct:  156 LGGLGTSSATSAFER 170          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: PSPA_DEIRA (Phage shock protein A homolog OS=Deinococcus radiodurans GN=DR_1473 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.152e-21
Identity = 58/156 (37.18%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKAR---AQSAKTATKVS 777
            M++FDRL+R++++  N ++S  EDP KI++QA+ +M       R   A  +A   +LE +     + + ++ +KA+ AL+ G EDLAREAL+R +++ D A     Q   Q++ V+ L +  R LE+KI E  SKK  L AR   AQ+ +T  +VS
Sbjct:    1 MSIFDRLSRLLRANVNDMISKAEDPAKIIDQALRDMRSAYADARNEVAGAMAQAAKLEREAGTNSKLAAEYEKKAEEALRGGSEDLAREALRRAQNHKDLAKGFDEQRTVQQSTVDQLKTQLRALEAKIDEMESKKTLLAARQKTAQAGETLDRVS 156          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: PSPA_SHIFL (Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.584e-19
Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV 774
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+++  L  R Q+A ++  V
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDV 152          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: PSPA_ECOLI (Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.584e-19
Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV 774
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+++  L  R Q+A ++  V
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDV 152          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: PSPA_ECO57 (Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.584e-19
Identity = 50/152 (32.89%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKV 774
            M +F R A +V +  NA+L   EDP+K++   + EM D LV++R  +A+ LA +K+L  + + A     +W  KA+LAL K  EDLAR AL  ++   D   +L+ ++    + +  +      LE+K+ E R+++  L  R Q+A ++  V
Sbjct:    1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDV 152          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: PSPA_BACSU (Phage shock protein A homolog OS=Bacillus subtilis GN=ydjF PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.193e-13
Identity = 45/155 (29.03%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEM 783
            M++  R   ++ +  NA+L   E+PEK+++Q +  MN DL K++  TA V+A ++R + +Y   +   E     A  ALQ G E  AR+ L+R+ S     + L+A           +      L S I E  ++K+ +KA+   AKT  +++++
Sbjct:    1 MSIIGRFKDIMSANINALLDKAENPEKMVDQYLRNMNSDLAKVKAETAAVMAEEQRAKREYHECQADMEKMESYAMKALQAGNESDARKFLERKTSLESKLSELQAANQIAATNAAQMRKMHDKLVSDIGELEARKNMIKAKWAVAKTQERMNKL 155          
BLAST of FC876615 vs. ExPASy Swiss-Prot
Match: LIAH_BACSU (Protein liaH OS=Bacillus subtilis GN=liaH PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 43/138 (31.16%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  373 LSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKYKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMF 786
            L   E+P+ +L Q V +M  D+ K +Q   +      + + KY+ A + +     +AQLA   GEE+LA++AL   K     A   KA  +Q  + + +L      LE+K+Q+ + KK  L ARA +AK    ++  F
Sbjct:   18 LDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLAFDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQALIARANAAKAKEHMNTTF 155          
The following BLAST results are available for this feature:
BLAST of FC876615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
IM30_PEA6.015e-8472.22Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH8.577e-7766.09Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ1.593e-7376.02Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY38.477e-3648.41Uncharacterized protein sll0617 OS=Synechocystis s... [more]
PSPA_DEIRA3.152e-2137.18Phage shock protein A homolog OS=Deinococcus radio... [more]
PSPA_SHIFL8.584e-1932.89Phage shock protein A OS=Shigella flexneri GN=pspA... [more]
PSPA_ECOLI8.584e-1932.89Phage shock protein A OS=Escherichia coli (strain ... [more]
PSPA_ECO578.584e-1932.89Phage shock protein A OS=Escherichia coli O157:H7 ... [more]
PSPA_BACSU9.193e-1329.03Phage shock protein A homolog OS=Bacillus subtilis... [more]
LIAH_BACSU1.568e-1231.16Protein liaH OS=Bacillus subtilis GN=liaH PE=2 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2DD07RM1 EHR Citrus clementina cDNA clone KN0AAN2DD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876615 ID=FC876615; Name=FC876615; organism=Citrus clementina; type=EST; length=829bp
GCACGAGGAATTTCTCGTCTTCTATCCAAAAGCACTCTGAAAACCAATCG
TTCTGTTTCCTGACAATAATTGAACTTGTGGGCATCCCGCAGAATGGCCG
CAAAGTCACAGATAGTTACGGGATTCACCATGCCCATGACACCAGCGCCG
TCCTCTTCTTCCTCGAGCTCTAGCAGCAGTCTCTGCATGGTCAAGAAGCC
CCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTACAA
GGTTAAGGATTGCTCCTTCCAGCCGATCCTATTGTTATAGACAAGGTGGA
GGAGCACTTAATACACGAATGAACCTATTTGATAGGTTAGCAAGAGTTGT
GAAGTCCTATGCAAATGCAATTCTGAGTTCCTTTGAAGATCCAGAGAAGA
TTTTAGAGCAAGCAGTACTTGAAATGAATGATGACTTGGTAAAGATGCGC
CAGGCCACGGCACAAGTGTTGGCATCTCAGAAGCGGTTGGAAAATAAGTA
CAAAGCTGCAGAGCAAGCTTCTGAAGACTGGTATCGCAAAGCACAGCTTG
CTCTTCAAAAAGGGGAAGAAGATCTGGCACGTGAGGCTCTCAAGAGACGC
AAATCTTATGCAGATAATGCTAATGCTTTGAAAGCTCAACTTGATCAACA
AAAGAATGTTGTTAATAACCTTGTTTCTAATACTCGGCTTTTGGAGAGCA
AGATACAGGAGGCAAGATCAAAGAAAGATACTCTGAAAGCAAGGGCTCAG
TCTGCAAAGACTGCAACCAAAGTGAGCGAGATGTTTGGGGAATGTCAACA
CTAGCAGTGCTCTTTCAGCTTTTGAAAAA
back to top