FC876630

Overview
NameFC876630
Unique NameFC876630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876630_ssr537 microsatellite FC876630_ssr537:537..546. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: AB20B_ARATH (ABC transporter B family member 20 OS=Arabidopsis thaliana GN=ABCB20 PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.912e-77
Identity = 144/163 (88.34%), Postives = 151/163 (92.64%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYGKGLRQHRLV 497
            IFSTTIRENIIYARHNASEAE+KEAARIANAHHFISSLPHGYDTH+GMRGV+LTPGQKQRIAIARVVLKNAPI+L+D           RVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL AKNGLYVRLMQPH+GKGLRQHRL+
Sbjct: 1246 IFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVELTPGQKQRIAIARVVLKNAPIILIDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLAAKNGLYVRLMQPHFGKGLRQHRLI 1408          

HSP 2 Score: 125.561 bits (314), Expect = 2.143e-28
Identity = 69/150 (46.00%), Postives = 101/150 (67.33%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 458
            + S +IRENI Y R +A+  +++EAA+ A+AH FISSL  GY+T VG  G+ +T  QK +++IAR VL N  ILLLD           R+VQEALD L++G ++TI+IA R +++++ D I V+  G++VE GTHD L+   GLY  L++
Sbjct:  501 LLSLSIRENIAYGR-DATLDQIEEAAKNAHAHTFISSLEKGYETQVGRAGLAMTEEQKIKLSIARAVLLNPTILLLDEVTGGLDFEAERIVQEALDLLMLG-RSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELINLGGLYAELLK 648          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: AB6B_ARATH (ABC transporter B family member 6 OS=Arabidopsis thaliana GN=ABCB6 PE=1 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 2.857e-73
Identity = 137/163 (84.05%), Postives = 146/163 (89.57%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQPHYGKGLRQHRLV 497
            IFSTTIRENIIYARHNASEAE+KEAARIANAHHFISSLPHGYDTH+GMRGV+LT GQKQRIAIARVVLKNAPILL+D           RVVQEALDTLIMGNKTTILIAHR AMMRHVDNIVVLNGG+IVEEGTHD L  KNGLYVRLMQPH+GK LR+H+L+
Sbjct: 1245 IFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHIGMRGVELTQGQKQRIAIARVVLKNAPILLIDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRVAMMRHVDNIVVLNGGKIVEEGTHDCLAGKNGLYVRLMQPHFGKNLRRHQLI 1407          

HSP 2 Score: 122.865 bits (307), Expect = 1.389e-27
Identity = 69/150 (46.00%), Postives = 100/150 (66.67%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 458
            + S +IRENI Y R +A+  +++EAA+ A+AH FISSL  GY+T VG  G+ LT  QK +++IAR VL +  ILLLD           RVVQEALD L++G ++TI+IA R +++R+ D I V+  G+++E GTHD L+    LY  L++
Sbjct:  499 LLSLSIRENIAYGR-DATLDQIEEAAKKAHAHTFISSLEKGYETQVGKTGLTLTEEQKIKLSIARAVLLDPTILLLDEVTGGLDFEAERVVQEALDLLMLG-RSTIIIARRLSLIRNADYIAVMEEGQLLEMGTHDELINLGNLYAELLK 646          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: AB2B_ARATH (ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.138e-36
Identity = 80/150 (53.33%), Postives = 108/150 (72.00%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSL-LAKNGLYVRLM 455
            +F+TTI ENI+Y    AS++EV E+A +ANAH FI+SLP GY T VG RGV ++ GQ+QRIAIAR +LKN  ILLLD           RVVQ+ALD L M N+TT+++AHR + +++ D I VL+GG+IVE+G+H  L L K+G Y +L+
Sbjct: 1077 LFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRL-MANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLI 1225          

HSP 2 Score: 132.88 bits (333), Expect = 1.342e-30
Identity = 67/151 (44.37%), Postives = 107/151 (70.86%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQ 458
            +F+TTIRENI+Y + +A+  E+  AA+++ A  FI++LP G++T VG RG+ L+ GQKQRIAI+R ++KN  ILLLD           + VQEALD +++G +TT+++AHR + +R+ D I V++ G+IVE G H++L++  +G Y  L++
Sbjct:  448 LFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVG-RTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLR 597          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: AB19B_ARATH (ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.222e-36
Identity = 77/150 (51.33%), Postives = 107/150 (71.33%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRLMQ 458
            +F+TTI ENI+Y + +A+  EV+ AA  ANAH FI+ LP GYDT VG RGV L+ GQKQRIAIAR +LK+  ILLLD            +VQEALD +++G +TT+++AHR   +R+VD+I V+  G++VE GTH+ L+AK+G Y  L++
Sbjct:  452 LFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVG-RTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIR 600          

HSP 2 Score: 143.665 bits (361), Expect = 7.605e-34
Identity = 82/163 (50.31%), Postives = 109/163 (66.87%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQPHYGKGLRQHRL 494
            +F+ TI +NI Y +  A+E+EV +AAR ANAH FIS LP GY T VG RGV L+ GQKQRIAIAR VLKN  +LLLD            V+QEAL+ L+ G +TT+++AHR + +R VD I V+  GRIVE+G+H  L+++  G Y RL+Q      L+ HR+
Sbjct: 1097 LFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRG-RTTVVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQ------LQTHRI 1252          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: AB10B_ARATH (ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 6.222e-36
Identity = 79/150 (52.67%), Postives = 109/150 (72.67%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLA-KNGLYVRLM 455
            +F+TTI ENI+Y +  ASE+EV EAA++ANAH FISSLP GY T VG RG+ ++ GQ+QRIAIAR VLKN  ILLLD           RVVQ+ALD L M ++TT+++AHR + +++ D I V+  G+I+E+G+H+ L+  KNG Y +L+
Sbjct: 1069 LFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRL-MRDRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGSHNILVENKNGPYSKLI 1217          

HSP 2 Score: 138.658 bits (348), Expect = 2.447e-32
Identity = 67/151 (44.37%), Postives = 108/151 (71.52%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAK-NGLYVRLMQ 458
            +F+TTIRENI+Y + +A+  E+  AA+++ A  FI++LP G++T VG RG+ L+ GQKQRI+I+R ++KN  ILLLD           ++VQEALD +++G +TT+++AHR + +R+ D I V+ GG+I+E G+HD L++  +G Y  L++
Sbjct:  448 LFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALDRVMVG-RTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLR 597          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: Y2003_STAA8 (Putative multidrug export ATP-binding/permease protein SAOUHSC_02003 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02003 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.810e-35
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 452
            +FS T++ENI+  R  A++ EV EAA++ANAH FI +LP GYDT VG RGV L+ GQKQR++IAR+ L N PIL+LD            ++QEALD L   ++TT+++AHR + + H D IVV+  G IVE GTH  L+AK G Y  L
Sbjct:  426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: Y1956_STAAR (Putative multidrug export ATP-binding/permease protein SAR1956 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1956 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.810e-35
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 452
            +FS T++ENI+  R  A++ EV EAA++ANAH FI +LP GYDT VG RGV L+ GQKQR++IAR+ L N PIL+LD            ++QEALD L   ++TT+++AHR + + H D IVV+  G IVE GTH  L+AK G Y  L
Sbjct:  426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: Y1924_STAAC (Putative multidrug export ATP-binding/permease protein SACOL1924 OS=Staphylococcus aureus (strain COL) GN=SACOL1924 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.810e-35
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 452
            +FS T++ENI+  R  A++ EV EAA++ANAH FI +LP GYDT VG RGV L+ GQKQR++IAR+ L N PIL+LD            ++QEALD L   ++TT+++AHR + + H D IVV+  G IVE GTH  L+AK G Y  L
Sbjct:  426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: Y1866_STAAM (Putative multidrug export ATP-binding/permease protein SAV1866 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1866 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.810e-35
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 452
            +FS T++ENI+  R  A++ EV EAA++ANAH FI +LP GYDT VG RGV L+ GQKQR++IAR+ L N PIL+LD            ++QEALD L   ++TT+++AHR + + H D IVV+  G IVE GTH  L+AK G Y  L
Sbjct:  426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572          
BLAST of FC876630 vs. ExPASy Swiss-Prot
Match: Y1847_STAA3 (Putative multidrug export ATP-binding/permease protein SAUSA300_1847 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_1847 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.810e-35
Identity = 75/148 (50.68%), Postives = 100/148 (67.57%), Query Frame = 3
Query:    9 IFSTTIRENIIYARHNASEAEVKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDXXXXXXXXXXXRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLAKNGLYVRL 452
            +FS T++ENI+  R  A++ EV EAA++ANAH FI +LP GYDT VG RGV L+ GQKQR++IAR+ L N PIL+LD            ++QEALD L   ++TT+++AHR + + H D IVV+  G IVE GTH  L+AK G Y  L
Sbjct:  426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL 572          
The following BLAST results are available for this feature:
BLAST of FC876630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 378
Match NameE-valueIdentityDescription
AB20B_ARATH1.912e-7788.34ABC transporter B family member 20 OS=Arabidopsis ... [more]
AB6B_ARATH2.857e-7384.05ABC transporter B family member 6 OS=Arabidopsis t... [more]
AB2B_ARATH2.138e-3653.33ABC transporter B family member 2 OS=Arabidopsis t... [more]
AB19B_ARATH6.222e-3651.33ABC transporter B family member 19 OS=Arabidopsis ... [more]
AB10B_ARATH6.222e-3652.67ABC transporter B family member 10 OS=Arabidopsis ... [more]
Y2003_STAA81.810e-3550.68Putative multidrug export ATP-binding/permease pro... [more]
Y1956_STAAR1.810e-3550.68Putative multidrug export ATP-binding/permease pro... [more]
Y1924_STAAC1.810e-3550.68Putative multidrug export ATP-binding/permease pro... [more]
Y1866_STAAM1.810e-3550.68Putative multidrug export ATP-binding/permease pro... [more]
Y1847_STAA31.810e-3550.68Putative multidrug export ATP-binding/permease pro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DE09RM1 EHR Citrus clementina cDNA clone KN0AAN2DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876630 ID=FC876630; Name=FC876630; organism=Citrus clementina; type=EST; length=634bp
GCACGAGGATCTTCTCGACAACAATCAGGGAAAATATTATATATGCAAGG
CATAATGCTAGTGAAGCTGAGGTGAAAGAGGCTGCTAGAATAGCTAACGC
TCACCATTTTATCAGCAGCTTGCCTCATGGCTATGACACACATGTGGGAA
TGAGGGGTGTTGACCTGACACCCGGACAAAAACAGAGAATTGCTATTGCC
CGAGTGGTGCTGAAGAATGCACCTATCTTGTTGTTGGATGAAGCTAGCTC
ATCCATTGAGTCCGAGTCAAGTCGAGTAGTACAGGAGGCTCTTGATACAC
TGATAATGGGGAACAAAACAACCATTCTGATTGCTCATAGAGCTGCAATG
ATGAGGCATGTTGATAACATAGTAGTTCTTAATGGAGGACGTATTGTGGA
GGAAGGGACTCATGATTCTTTGCTTGCAAAAAATGGCTTGTATGTTCGGT
TGATGCAACCTCACTATGGGAAGGGTTTACGGCAACATCGATTAGTATAG
GTTGGATTTGTGATTGATTGTAACTTATATGTGATCTATATATATAGTGC
CCATTCAGCTCATTTCAAATTGCTGAAAATCCATACGCCTGCTAATTTTA
TTGATATCTGGTTGGAGTTTCCAGAATGAGATCG
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