FC876643

Overview
NameFC876643
Unique NameFC876643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length118
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYK_ORYSJ (Lysyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.622e-15
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            NMRLYMRIAPELYLKELVVGGLDRVYEIGKQF NEGIDL
Sbjct:  318 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDL 356          
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYK_ARATH (Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.774e-13
Identity = 34/39 (87.18%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    1 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            +MRLYMRIAPELYLK+L+VGGL+RVYEIGKQF NEGIDL
Sbjct:  327 DMRLYMRIAPELYLKQLIVGGLERVYEIGKQFRNEGIDL 365          
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYKC_YEAST (Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=KRS1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.922e-12
Identity = 31/39 (79.49%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    1 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            +M +YMRIAPEL+LK+LVVGGLDRVYEIG+QF NEGID+
Sbjct:  294 DMDMYMRIAPELFLKQLVVGGLDRVYEIGRQFRNEGIDM 332          
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYKC_SCHPO (Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=krs1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.165e-11
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            +M LYMRIAPELYLK LVVGGLDRVYEIG+QF NEG DL
Sbjct:  295 DMDLYMRIAPELYLKMLVVGGLDRVYEIGRQFRNEGADL 333          
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYKC_ENCCU (Probable lysyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU04_0580 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.522e-11
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1
Query:   10 LYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            LYMR++PELYLK+LVVGGL+RVYEIGKQF NEGIDL
Sbjct:  157 LYMRVSPELYLKKLVVGGLERVYEIGKQFRNEGIDL 192          
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYK_MOUSE (Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.988e-11
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            +M LYMRIAPELY K LVVGG+DRVYEIG+QF NEGIDL
Sbjct:  289 DMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL 327          
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYK_HUMAN (Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.988e-11
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            +M LYMRIAPELY K LVVGG+DRVYEIG+QF NEGIDL
Sbjct:  291 DMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL 329          
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYK_CRIGR (Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KARS PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.988e-11
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            +M LYMRIAPELY K LVVGG+DRVYEIG+QF NEGIDL
Sbjct:  291 DMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL 329          
BLAST of FC876643 vs. ExPASy Swiss-Prot
Match: SYKC_NOSCE (Probable lysyl-tRNA synthetase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100909 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.428e-11
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    4 MRLYMRIAPELYLKELVVGGLDRVYEIGKQFXNEGIDL 117
            M L++RIAPELYLK+LV+GG+DRVYEIGK F NEGIDL
Sbjct:  226 MNLFLRIAPELYLKKLVIGGMDRVYEIGKLFRNEGIDL 263          
The following BLAST results are available for this feature:
BLAST of FC876643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SYK_ORYSJ8.622e-1597.44Lysyl-tRNA synthetase OS=Oryza sativa subsp. japon... [more]
SYK_ARATH2.774e-1387.18Lysyl-tRNA synthetase OS=Arabidopsis thaliana GN=A... [more]
SYKC_YEAST8.922e-1279.49Lysyl-tRNA synthetase, cytoplasmic OS=Saccharomyce... [more]
SYKC_SCHPO1.165e-1184.62Lysyl-tRNA synthetase, cytoplasmic OS=Schizosaccha... [more]
SYKC_ENCCU1.522e-1186.11Probable lysyl-tRNA synthetase, cytoplasmic OS=Enc... [more]
SYK_MOUSE1.988e-1182.05Lysyl-tRNA synthetase OS=Mus musculus GN=Kars PE=1... [more]
SYK_HUMAN1.988e-1182.05Lysyl-tRNA synthetase OS=Homo sapiens GN=KARS PE=1... [more]
SYK_CRIGR1.988e-1182.05Lysyl-tRNA synthetase OS=Cricetulus griseus GN=KAR... [more]
SYKC_NOSCE4.428e-1178.95Probable lysyl-tRNA synthetase, cytoplasmic OS=Nos... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2DF06RM1 EHR Citrus clementina cDNA clone KN0AAN2DF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876643 ID=FC876643; Name=FC876643; organism=Citrus clementina; type=EST; length=118bp
AACATGAGGCTGTACATGCGTATTGCACCTGAGCTATATCTAAAGGAGCT
GGTAGTTGGTGGACTGGACCGAGTTTATGAGATAGGAAAACAATTTANAA
ACGAGGGTATTGATCTGA
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