FC876644

Overview
NameFC876644
Unique NameFC876644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1215 contig Ccv1_Contig1215:336..967. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876644 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.479e-18
Identity = 45/67 (67.16%), Postives = 51/67 (76.12%), Query Frame = -3
Query:  427 IPFGGVIGGLMVRPRDLNFQFFETAIFFITVIVGAFFLQEGIFNYFKGLMLFFCFLLVGVSFFVQED 627
            +PF  VIG +M +  DLNFQ FETA+ FITVIV AFFLQEG  NYFKGLML  C+L+V  SFFV ED
Sbjct:  369 VPFCVVIGWMMGQQMDLNFQLFETAMLFITVIVVAFFLQEGSSNYFKGLMLILCYLIVAASFFVHED 435          
BLAST of FC876644 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.979e-18
Identity = 45/67 (67.16%), Postives = 49/67 (73.13%), Query Frame = -3
Query:  427 IPFGGVIGGLMVRPRDLNFQFFETAIFFITVIVGAFFLQEGIFNYFKGLMLFFCFLLVGVSFFVQED 627
            +PF  VIG +M    DLNFQ FETA  FITVIV AFFLQEG  NYFKGLML  C+L+V  SFFV ED
Sbjct:  369 VPFCVVIGWMMGAQMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHED 435          
BLAST of FC876644 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.458e-16
Identity = 43/67 (64.18%), Postives = 48/67 (71.64%), Query Frame = -3
Query:  427 IPFGGVIGGLMVRPRDLNFQFFETAIFFITVIVGAFFLQEGIFNYFKGLMLFFCFLLVGVSFFVQED 627
            IPF  VIG +M +  DLNFQ FETA  FITV+V AF LQEG  NYFKGLML  C+L+V  SFFV  D
Sbjct:  364 IPFCVVIGWIMGQQMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVD 430          
BLAST of FC876644 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 9.340e-16
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = -3
Query:  427 IPFGGVIGGLMVRPRDLNFQFFETAIFFITVIVGAFFLQEGIFNYFKGLMLFFCFLLVGVSFFVQED 627
            IPF  VIG +M +  DLNFQ FETA  FITV+V AF LQ+G+ NY KGLML  C+L+V  SFFV  D
Sbjct:  345 IPFCVVIGWMMGQKMDLNFQLFETATLFITVLVVAFMLQDGVANYLKGLMLILCYLIVAASFFVHVD 411          
BLAST of FC876644 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.125e-14
Identity = 42/68 (61.76%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  427 IPFGGVIGGLMVRPRDLNFQFFETAIFFITVIVGAFFLQ-EGIFNYFKGLMLFFCFLLVGVSFFVQED 627
            +PF  VIG +M    DLN Q FETA   ITVIV AFFLQ EG  NYFK LML  C+L+V  SFFV ED
Sbjct:  377 VPFCVVIGWMMGAQMDLNLQLFETATLLITVIVVAFFLQLEGTSNYFKRLMLILCYLIVAASFFVHED 444          
BLAST of FC876644 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.125e-14
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  427 GIPFGGVIGGLMVRPRDLNFQFFETAIFFITVIVGAFFLQEGIFNYFKGLMLFFCFLLVGVSFFVQED 630
            GIPF  V+G +M +P DLNF  FETA    TV+V AF LQ+G  N  KGLMLF C+L+V  SF+V  D
Sbjct:  368 GIPFCVVMGWMMGKPMDLNFHLFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLCYLIVAASFYVHAD 435          
The following BLAST results are available for this feature:
BLAST of FC876644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CAX2_ARATH4.479e-1867.16Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX5_ARATH9.979e-1867.16Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ORYSJ2.458e-1664.18Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX3_ORYSJ9.340e-1661.19Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX6_ARATH5.125e-1461.76Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
CAX4_ORYSJ5.125e-1455.88Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2DF07RM1 EHR Citrus clementina cDNA clone KN0AAN2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876644 ID=FC876644; Name=FC876644; organism=Citrus clementina; type=EST; length=632bp
TTTTTTTTTTTTTTTTTTTGGCGTTATAAAACCTCCATTTAATTGGACAG
TCATTGAAATATCCTGCCACAAAGTGGAAACAACAAAGGGAAATCCCCTC
AAAAGAATTGAAAAAGAATTACAAAGGAAAAAAAAATGAACCGTTTTTCT
CCGTGAAAAACACAATTTTTCTTACTCCTCATAAACATTTAACACCAAAG
CAGGGATTGAAAGGAAAAAACACAAAAAACAGCAAGAAACCCGCTCAATA
AGTTACTGAACAAAAACTAAGGAAATCCAAAAAATGGCTTGGCTGCGTTT
CCAAACTGAATATATAAATATATACAGCAGCCCCCAAGTTGATCCGTAAC
TTCCGGAAATACATCCCAAAAGCCGAATTGCTGCTTTCATGAACTAAGTT
TTTACTTGAATAACATCTGGAATAAGATCTTCCTGCACAAAAAAACTAAC
ACCTACCAACAAAAAACAAAAAAACAGCATGAGTCCTTTAAAGTAATTAA
AAATTCCTTCCTGCAGAAAAAATGCCCCAACTATAACAGTTATGAAAAAA
ATTGCCGTCTCAAAAAATTGAAAGTTTAAATCCCTAGGTCGAACCATTAA
CCCCCCAATAACCCCCCCAAAAGGGATCCCAA
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