FC876646

Overview
NameFC876646
Unique NameFC876646
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876646 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 4.837e-74
Identity = 139/230 (60.43%), Postives = 161/230 (70.00%), Query Frame = 3 
Query:   15 STFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSKSYPFAFMLASAGYLLTMFGDCIINFVI-------------KQGXXXXXXXXXXXXXXXXXXXXXNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHNCDWIYAVSMGL 665
            STF  GVSPYFYRWNESFLLLGTQF+GG+FL T+++HFLSD+NETF+ L  K YP+AFMLA+AGY LTM  D  + FV              +                       +    RTS  GDT LLI ALCFHS+FEGIAIG+S TK +AWRNLWTISLHK+FAA+AMGIALL++IPKRPF LT  YSFAF ISSPIGVGIGI I+AT+QG   DW YA+SMGL
Sbjct:   74 STFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLSDANETFRGLKHKEYPYAFMLAAAGYCLTMLADVAVAFVAAGSNNNHVGASVGESREDDDVAVKEEGRREIKSGVDVSQALIRTSGFGDTALLIFALCFHSIFEGIAIGLSDTKSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAGGDWTYAISMGL 303
[Close]
BLAST of FC876646 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.712e-66
Identity = 132/226 (58.41%), Postives = 157/226 (69.47%), Query Frame = 3 
Query:   12 VSTFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDL--------TSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGXXXXXXXXXXXXXXXXXXXXXNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHNCDWIYAVSMGL 665
            V TF  GVSPYF +W++ FL+LGTQFAGGVFL T++MHFLSD++ETF+ L         S +YPFA+MLA AG++LTM  D +I  +  +                             +SIGD+ILLI+ALCFHSVFEGIAIG+S TK +AWR LWTI+LHKIFAAIAMGIALLRMIP RP   +  YSFAFAISSPIGV IGI IDATTQG   DWI+A+SM L
Sbjct:   58 VLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSKTQNDLELQGEDKSNQRSAT--------TETSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSL 275
The following BLAST results are available for this feature:
BLAST of FC876646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZIP2_ARATH4.837e-7460.43Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZIP11_ARATH3.712e-6658.41Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2DF09RM1 EHR Citrus clementina cDNA clone KN0AAN2DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876646 ID=FC876646; Name=FC876646; organism=Citrus clementina; type=EST; length=667bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCGATGATGCATTTCTTGAGTGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTAT
AAAGCAGGGTAGCAAAAAAGAAACTAAAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCAGTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATAATTGCGATTGGATTTATGCA
GTTTCAATGGGACTTGC
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