FC876649

Overview
NameFC876649
Unique NameFC876649
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10401 contig Ccv1_Contig10401:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.988e-55
Identity = 57/98 (58.16%), Postives = 77/98 (78.57%), Query Frame = 3
Query:   27 IQVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMIL 320
            ++VF+RERLNGHYG  AFV  NT SA P+L +I+ I G I Y++ GLH G+ H+++FVL L+A + +VESLMM +AS+VPN+L GII GAGIQG+ +L
Sbjct:  459 MKVFQRERLNGHYGVAAFVIANTLSATPFLIMITFISGTICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFML 556          

HSP 2 Score: 108.612 bits (270), Expect = 8.988e-55
Identity = 45/105 (42.86%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  328 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN-----NLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 627
            GFFRLPND+P PFW+YP+ YI+FH +A QG ++N+  GL FD+      + GE VL + +Q+ +  SKW++L+++  M++ YR++F  +IKT E + P V+ +++
Sbjct:  559 GFFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIA 663          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.159e-40
Identity = 43/98 (43.88%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   27 IQVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMIL 320
            ++VF +ERL+G+YG + ++  N  S+ P+L  IS+I G I Y L     G+ H+ +F L +F  + ++ESLMM+VAS+VPN+L G+ITGAG+ G++++
Sbjct:  437 MKVFYKERLSGYYGVSVYILSNYISSFPFLVAISVITGTITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMM 534          

HSP 2 Score: 88.5817 bits (218), Expect = 2.159e-40
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  328 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF------DNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 627
            GFFRL  DLP  FW+YP+ YI++  +A QG +KN+F GL+F      +  + GE+V+   + +++ YSKW DLA +  ++V YRL+F  ++K  E+  P +KA  +
Sbjct:  537 GFFRLLPDLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKAIQA 642          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.056e-39
Identity = 44/98 (44.90%), Postives = 70/98 (71.43%), Query Frame = 3
Query:   27 IQVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMIL 320
            ++VF +ERL+G+YG + ++  N  S+ P+L  I+LI G+I Y +     G  H+ +F L +F  + ++ESLMM+VASLVPN+L G+ITGAGI G++++
Sbjct:  438 MKVFYKERLSGYYGVSVYIISNYVSSFPFLVAIALITGSITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMM 535          

HSP 2 Score: 87.4261 bits (215), Expect = 1.056e-39
Identity = 41/106 (38.68%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  328 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD------NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVVKAFMS 627
            GFFRL  DLP  FW+YP+ ++++  +A QG +KN+F GL+FD        + GEQV+   + +Q+ +SKW DL+ +  ++V YR++F  ++K  E+ +P +KA  +
Sbjct:  538 GFFRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKAIQA 643          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.002e-36
Identity = 44/103 (42.72%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   27 IQVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGWRIF 335
            ++VF RERLNGHYG   +   N  S+LP++ L+ L   +I  Y+     G  HF Y  L L   +  VES MM++AS+VPN+L G++ GAG  G+M+L    F
Sbjct:  432 MKVFSRERLNGHYGVAVYTVSNLLSSLPFIILMCLSTSSITIYMVRFQSGGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFF 534          

HSP 2 Score: 80.4925 bits (197), Expect = 5.002e-36
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = 1
Query:  322 AGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIKTVEKMKPVV 612
            + GFFR   DLP  FW+YP+ YI +  +A QG +KNE  G+++D+       + GE +L+    +    SKW+DLA++  +++ YR+ F  I+K  EK+ PV+
Sbjct:  530 SAGFFRFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVI 632          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.993e-21
Identity = 33/115 (28.70%), Postives = 58/115 (50.43%), Query Frame = 3
Query:    6 HEGLG---VCIQVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGWRIFSI 341
            + GLG     + ++  E  N H GA  F+ G    ++P+L L+S+    + Y++ GL   +   +YFVL  F C+L+ E LM+ +A +  +     +T   +  +M+L    F I
Sbjct:  479 YSGLGHSLSSVAIYRSEASNQHSGAFVFLLGQFLGSIPFLFLMSISSSLVFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRI 593          

HSP 2 Score: 61.6178 bits (148), Expect = 2.993e-21
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  322 AGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD----NNLDGEQVLRDKWQLQMG-YSKWVDLAILFGMVVFYRLVFLGIIK 585
            A G FR+   LP P W YP  YI+FH Y+ +G+ +NE+ G  F      ++ G Q ++  +Q+     +KW ++ +L  M   YRL+   +++
Sbjct:  587 AAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLLVYVLLR 679          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB8G_ARATH (ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.069e-14
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   42 RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTG 281
            RE  +G Y  ++ +  NT   LPYL +IS+I    VY+L GL   +Q F YFVL+++  +L+  S ++ ++SL PNY+TG
Sbjct:  393 RETSSGIYRLSSHILANTLVFLPYLFVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAPNYITG 472          

HSP 2 Score: 32.7278 bits (73), Expect = 2.069e-14
Identity = 27/105 (25.71%), Postives = 46/105 (43.81%), Query Frame = 1
Query:  328 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD------------NNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYR-LVFLGIIKTVEKMK 603
            G+F     LP  +W + +Y+ + +KYA   +  NE+  L                 + G  VL+ K   +    +W ++ +L G  V YR L FL +++ V   K
Sbjct:  488 GYFISKESLPK-YWLF-MYFFSMYKYALDALLINEYSCLASKCLVWLEEAQTKICMVTGGDVLKKKGLHEK--QRWFNVYVLLGFFVLYRVLCFLALLRRVSGSK 588          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB23G_ARATH (ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.883e-14
Identity = 24/84 (28.57%), Postives = 54/84 (64.29%), Query Frame = 3
Query:   30 QVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTG 281
            +V  +E   G Y  ++++  NT + +P+L ++SL+    VY++ GL+   Q F +FVL ++  +L+  SL++ ++++ P++++G
Sbjct:  428 RVLMKESSRGSYRISSYMIANTIAFVPFLFVVSLLFSIPVYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISG 511          

HSP 2 Score: 41.5874 bits (96), Expect = 5.883e-14
Identity = 24/93 (25.81%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  328 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK---FDNN-----LDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGII 582
            G+F     +P P W + +YY++ ++Y  + M  NE+  ++   F +      + GE VL+++   +   ++W+++ I+    VFYR++  GI+
Sbjct:  527 GYFIPKEKIPKP-WMF-MYYVSLYRYPLESMVVNEYWSMREECFSSGNMGCLMTGEDVLKERGLDKD--TRWINVGIMLAFFVFYRILCWGIL 615          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB4G_ARATH (ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.046e-12
Identity = 30/80 (37.50%), Postives = 49/80 (61.25%), Query Frame = 3
Query:   42 RERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTG 281
            RE  +G Y  ++ +  NT   LPYL LI++I    +Y+L GL   +Q   YFVL+++  +L+  S ++ ++SL PNY+ G
Sbjct:  381 RETSSGLYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLVIWIIVLMANSFVLFLSSLAPNYIAG 460          

HSP 2 Score: 30.8018 bits (68), Expect = 1.046e-12
Identity = 29/104 (27.88%), Postives = 46/104 (44.23%), Query Frame = 1
Query:  328 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNE-----------FEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYR-LVFLGIIKTVEKMK 603
            G+F     LP  +W + +Y+ + +KYA   +  NE           FE    ++ L     + DK  L     +W ++ +L G  V YR L FL ++K V   K
Sbjct:  476 GYFISKESLPK-YWLF-MYFFSMYKYALDALLINEYSCLHNKCLVWFEEASVNSCLVTGGDVLDKNGLH-ERQRWFNVYMLLGFFVLYRVLCFLVLLKRVSGSK 576          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB10G_ARATH (ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.859e-12
Identity = 32/107 (29.91%), Postives = 58/107 (54.21%), Query Frame = 3
Query:    9 EGLGVCIQ---VFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMIL 320
            EGL + +Q   +  RE     Y   ++V  +T   +P+L +IS++    VY+L GL +    F+YF L+++  +L+  S +   ++LVPN++ G    +G+ G   L
Sbjct:  401 EGLPIFLQDRRILMRETSRRAYRVLSYVLADTLIFIPFLLIISMLFATPVYWLVGLRRELDGFLYFSLVIWIVLLMSNSFVACFSALVPNFIMGTSVISGLMGSFFL 507          

HSP 2 Score: 31.9574 bits (71), Expect = 3.859e-12
Identity = 19/80 (23.75%), Postives = 40/80 (50.00%), Query Frame = 1
Query:  328 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLV 567
            G+F   + +P  +W++ ++Y++  KY ++ +  NE+ G  F    D ++             KW +L I+   +V YR++
Sbjct:  510 GYFIAKDRIP-VYWEF-MHYLSLFKYPFECLMINEYRGDVFLKQQDLKES-----------QKWSNLGIMASFIVGYRVL 576          
BLAST of FC876649 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.230e-11
Identity = 25/97 (25.77%), Postives = 55/97 (56.70%), Query Frame = 3
Query:   30 QVFERERLNGHYGATAFVFGNTFSALPYLALISLIPGAIVYYLPGLHKGYQHFIYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMIL 320
            ++  +E  +G Y  +++   N    LP+L +++++    VY+L GL+  +  F++F LL++  +    S+++  ++LVPN++ G    +G+ G   L
Sbjct:  449 EILMKETSSGSYRVSSYAVANGLVYLPFLLILAILFSTPVYWLVGLNPSFMAFLHFSLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFL 545          

HSP 2 Score: 30.8018 bits (68), Expect = 5.230e-11
Identity = 24/92 (26.09%), Postives = 45/92 (48.91%), Query Frame = 1
Query:  328 GFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK------FDNNLDGEQVLRDKWQLQMGYSKWVDLAILFGMVVFYRLVFLGIIK 585
            G+F   +++P  +W + ++YI+  KY ++G   NEF          F   L  E+ L  K +     S+W ++ I+   V+ YR +   I++
Sbjct:  548 GYFISNHEIPG-YWIF-MHYISLFKYPFEGFLINEFSKSNKCLEYGFGKCLVTEEDLL-KEERYGEESRWRNVVIMLCFVLLYRFISYVILR 636          
The following BLAST results are available for this feature:
BLAST of FC876649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AB11G_ARATH8.988e-5558.16ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB15G_ARATH2.159e-4043.88ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH1.056e-3944.90ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH5.002e-3642.72ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB3G_ARATH2.993e-2128.70ABC transporter G family member 3 OS=Arabidopsis t... [more]
AB8G_ARATH2.069e-1441.25ABC transporter G family member 8 OS=Arabidopsis t... [more]
AB23G_ARATH5.883e-1428.57ABC transporter G family member 23 OS=Arabidopsis ... [more]
AB4G_ARATH1.046e-1237.50ABC transporter G family member 4 OS=Arabidopsis t... [more]
AB10G_ARATH3.859e-1229.91ABC transporter G family member 10 OS=Arabidopsis ... [more]
AB5G_ARATH5.230e-1125.77ABC transporter G family member 5 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2DF12RM1 EHR Citrus clementina cDNA clone KN0AAN2DF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876649 ID=FC876649; Name=FC876649; organism=Citrus clementina; type=EST; length=831bp
TTCGGCACGAGGGTTTGGGTGTGTGTATACAGGTATTTGAGCGAGAGAGA
CTAAACGGGCACTACGGTGCCACTGCGTTTGTGTTTGGCAACACATTTTC
TGCGCTGCCATACTTAGCTCTCATTTCATTGATTCCTGGAGCGATAGTTT
ATTACCTTCCGGGACTTCACAAAGGATATCAACACTTCATATACTTTGTT
TTGTTATTGTTTGCTTGCATGTTGCTCGTCGAGAGCCTAATGATGATCGT
TGCAAGCTTGGTGCCCAATTATCTGACGGGCATAATAACAGGAGCTGGAA
TTCAAGGCCTTATGATATTAGGCTGGCGGATTTTTTCGATTGCCAAATGA
TCTTCCTCATCCATTTTGGAAATACCCATTATATTATATTGCTTTCCATA
AATATGCGTACCAAGGAATGTTCAAGAACGAGTTTGAAGGTCTGAAATTT
GACAACAATCTAGATGGCGAACAGGTTTTGAGAGATAAATGGCAACTGCA
AATGGGATATTCTAAGTGGGTTGATCTTGCTATCTTGTTTGGTATGGTGG
TTTTTTATCGACTTGTATTCTTGGGAATCATCAAGACAGTTGAAAAGATG
AAGCCTGTGGTTAAAGCTTTTATGTCTGTGCCCATGAAACAAACAACTCA
AATCATGGAAAATCCGTGTGCTACACCTCCACAAGAAGACAAAATATTTT
ACCAGTGATCGTGAACAAACGACTCTTCGGATATTCGCTAGTTCAACTAG
TAAAATTGCTCGAAGTAGGTACAAAAACTCTGTTCTCATGGGTGGAAGAG
GAATAATTTAATTAGGAAGCATATTTTAGCT
back to top