FC876688

Overview
NameFC876688
Unique NameFC876688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876688 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.137e-95
Identity = 170/269 (63.20%), Postives = 203/269 (75.46%), Query Frame = 3
Query:   15 STFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLNDSNETFKDLTSKSYPFAFMLTSAGYLLTMFGDCIIDFVIKQG-----------SKKKTIVDVEEEKSEEV--GTDGNPVFFRTSSIGDTILLILALCFHSFFEGIAIGVSATKGEAWKNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIA*GFKPQNKCYFDAPFFKFLAVLSG 782
            STF  GVSPYFYRWNESFLLLGTQF+GG+FL T+++HFL+D+NETF+ L  K YP+AFML +AGY LTM  D  + FV               S++   V V+EE   E+  G D +    RTS  GDT LLI ALCFHS FEGIAIG+S TK +AW+NLWTISLHK+FAA+AMGIALL++IPKRPF LT  YSFAF ISSPIGVGIGI I+AT+QG   DW YAISMGLACGVF+YVA+NHLI+ G+KP+ +CYFD P +KF+AV  G
Sbjct:   74 STFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLSDANETFRGLKHKEYPYAFMLAAAGYCLTMLADVAVAFVAAGSNNNHVGASVGESREDDDVAVKEEGRREIKSGVDVSQALIRTSGFGDTALLIFALCFHSIFEGIAIGLSDTKSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAGGDWTYAISMGLACGVFVYVAVNHLISKGYKPREECYFDKPIYKFIAVFLG 342          
BLAST of FC876688 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.550e-83
Identity = 154/265 (58.11%), Postives = 193/265 (72.83%), Query Frame = 3
Query:   12 VSTFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLNDSNETFKDLT--------SKSYPFAFMLTSAGYLLTMFGDCIIDFVIKQGSKKKTIVDVEEEKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSFFEGIAIGVSATKGEAWKNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIA*GFKPQNKCYFDAPFFKFLAVLSG 782
            V TF  GVSPYF +W++ FL+LGTQFAGGVFL T++MHFL+D++ETF+ L         S +YPFA+ML  AG++LTM  D +I  +  +      +   ++       T+        +SIGD+ILLI+ALCFHS FEGIAIG+S TK +AW+ LWTI+LHKIFAAIAMGIALLRMIP RP   +  YSFAFAISSPIGV IGI IDATTQG IADWI+A+SM LACGVF+YV++NHL+A G++P  K + D P +KFLAVL G
Sbjct:   58 VLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSKTQNDLELQGEDKSNQRSATTE--------TSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSLACGVFVYVSVNHLLAKGYRPNKKVHVDEPRYKFLAVLFG 314          
BLAST of FC876688 vs. ExPASy Swiss-Prot
Match: S39A1_DANRE (Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 63/250 (25.20%), Postives = 103/250 (41.20%), Query Frame = 3
Query:   87 FAGGVFLGTSMMHFLND-----SNETFKDLTSKSYPFAFMLTSAGYLLTMFGDCIIDFVIKQGSKKKTIVDVEEEKSEEVGTDGNP-------------VFFRTSSIGDTILLILALCFHSFFEGIAIGVSATKGEAWKNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIA*GFKPQNKCYFDAPFFKFLAVLSG 782
            FAGGVFL   ++  + D       E  K      +P    + + G+   +  + ++     +G + +    +    +      G+P             V F   S   + +L L+L  HS FEG+AIG+  T  +  +    I +HK     ++ + L++   K   L    Y   FAI SP+G+GIGI +   T+      I A+  GLA G FIY+    ++     P      + P  K L +L G
Sbjct:   51 FAGGVFLSACLLDIIPDYLSDIHGELQKRDLDDGFPLPEFIMACGFFTVLILEKMV-LSCTEGHRNEETAPLLAPAAPNGHAHGHPSVNDLEGSGHHVHVDFHAHSSFRSFMLFLSLSLHSVFEGLAIGLQTTNAKVLEICIAILVHKSIIVFSLSVKLVQSAVKP--LWVVLYVTVFAIMSPLGIGIGIVV-IETERQAGGLIQAVLEGLAAGTFIYITFLEIL-----PHELNSSERPLLKVLFLLCG 291          
BLAST of FC876688 vs. ExPASy Swiss-Prot
Match: S39A1_TAKRU (Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.870e-12
Identity = 61/234 (26.07%), Postives = 104/234 (44.44%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMHFLND-----SNETFKDLTSKSYPFAFMLTSAGYLLTMFGDCIIDFV--IKQGSKKKTIVDVEEEKSEEVGTDGNP----------VFFRTSSIGDTILLILALCFHSFFEGIAIGVSATKGEAWKNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLI 707
            + + L L + FAGGVFL    +  + D     + E        S+P    + +AG+   +  + I+     ++   +++T +  E +     G    P          V F+  S   + +L L+L  HS FEG+AIG+  T  +  +    I +HK     ++ + L++     P L  AAY   FA+ SP+G+ IGI++    Q      I AI  G A G F+Y+    ++
Sbjct:   41 HRTVLSLISCFAGGVFLSACFLDIIPDYLSDINTELHARQLETSFPLPEFIMAAGFFTVLILERIVLNCKEMRATHEERTTLIPERKSGHGHGHGDGPDPESSGHHVHVDFQAHSPFRSFMLFLSLSLHSIFEGLAIGLQTTDPKVVEICIAILVHKSIIVFSLAVKLVQ--SAIPPLWVAAYIGVFALMSPVGIAIGISV-MEAQLAAGPLIQAILEGFAAGTFVYITFLEIL 271          
BLAST of FC876688 vs. ExPASy Swiss-Prot
Match: ZNTD_DICDI (Protein zntD OS=Dictyostelium discoideum GN=zntD PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.440e-12
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  330 VFFRTSSIGDTILLILALCFHSFFEGIAIGVSATKGEAWKNLWTISLHKIFAAIAMGIALLRMIPKRP-FLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLI 707
            V  + S+I    +L++AL  HS FEG+A+GV +++   +  L  I  HKI A+ A+GI+ +    ++P FL      F F+++SPIG  +G+ I     G     +  I  G+A G F+YVA+  +I
Sbjct:  527 VVTKKSNILLPFILVIALSIHSLFEGLAMGVQSSEIRVFDILIAIFAHKILASFALGISTITSSNEKPSFLKLFLLVFVFSLTSPIGSILGMVI--VGSGVTGSMVPPILQGIASGTFLYVAVVEII 651          
BLAST of FC876688 vs. ExPASy Swiss-Prot
Match: S39A1_HUMAN (Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 61/257 (23.74%), Postives = 112/257 (43.58%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLNDSNETFKDLTSK-----SYPFAFMLTSAGYLLTMFGDCIIDFVIKQGSKKKTIVDVEEEKSEEVGT-DGNPVFFR-------------TSSIGDTILLILALCFHSFFEGIAIGVSATKGEAWKNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIA*GFKPQNKCYFDAPFFKFLAVLSG 782
            L L + FAGGVFL T ++  L D      +  +       +P    + + G+ L +  + I     K+ S    +    EE    +GT +G P  +              T S     +L+ +L  HS FEG+A+G+   +  A +    + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVMEQIT-LAYKEQSGPSPL----EETRALLGTVNGGPQHWHDGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQ--VVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELASSEQRILKVILLLAG 312          
BLAST of FC876688 vs. ExPASy Swiss-Prot
Match: S39A1_BOVIN (Zinc transporter ZIP1 OS=Bos taurus GN=SLC39A1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 64/270 (23.70%), Postives = 119/270 (44.07%), Query Frame = 3
Query:   30 GVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLNDS----NETFKDL-TSKSYPFAFMLTSAGYLLTMFGDCIIDFVIKQGSKKKTIVDVEEEKSEEVGT-DGNPVFFR----------TSSIGDTI---LLILALCFHSFFEGIAIGVSATKGEAWKNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIA*GFKPQNKCYFDAPFFKFLAVLSG 782
            G +P      +  L L + FAGGVFL T ++  L D     +E    L  +  +P    + + G+ L +  +      I    K+++     EE    +GT +G P  +            SS    +   +L+ +L  HS FEG+A+G+   +  A +    + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G
Sbjct:   56 GANPEASASRQKALSLVSCFAGGVFLATCLLDLLPDYLGAIDEALAALHVTLQFPLQEFILAMGFFLVLVME-----QITLAYKEQSGPPPREETRALLGTVNGGPQHWHDGLGVPQAGGASSAPSALRACVLVFSLALHSVFEGLAVGLQRDQARAMELCLALLLHKGILAVSLSLRLLQSHLRAQ--VVAGCGILFSCMTPLGIGLGTAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELATSEQRILKVILLLAG 312          
BLAST of FC876688 vs. ExPASy Swiss-Prot
Match: S39A1_MOUSE (Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 63/257 (24.51%), Postives = 114/257 (44.36%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLNDS----NETFKDL-TSKSYPFAFMLTSAGYLLTMFGDCIIDFVIKQGSKKKTIVDVEEEKSEEVGT-DGNPVFFRTS----SIGDT---------ILLILALCFHSFFEGIAIGVSATKGEAWKNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIA*GFKPQNKCYFDAPFFKFLAVLSG 782
            L L + FAGGVFL T ++  L D     +E  + L  +  +P    + + G+ L +  + I     +Q S         EE    +GT +G P  +         G T          +L+ +L  HS FEG+A+G+   +  A +    + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALEALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSSPPHP-----EETRALLGTVNGGPQHWHDGPGIPQAGGTPAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLR--VQVVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELATSEQRILKVILLLAG 312          
The following BLAST results are available for this feature:
BLAST of FC876688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ZIP2_ARATH5.137e-9563.20Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZIP11_ARATH1.550e-8358.11Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
S39A1_DANRE2.885e-1325.20Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE... [more]
S39A1_TAKRU1.870e-1226.07Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc3... [more]
ZNTD_DICDI5.440e-1234.65Protein zntD OS=Dictyostelium discoideum GN=zntD P... [more]
S39A1_HUMAN4.606e-1123.74Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 P... [more]
S39A1_BOVIN4.606e-1123.70Zinc transporter ZIP1 OS=Bos taurus GN=SLC39A1 PE=... [more]
S39A1_MOUSE7.856e-1124.51Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BD10RM1 EHR Citrus clementina cDNA clone KN0AAN1BD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876688 ID=FC876688; Name=FC876688; organism=Citrus clementina; type=EST; length=789bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCCATGATGCATTTCTTGAATGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAACATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCGATTTTGTTAT
AAAGCAGGGTAGCAAAAAAAAAACTATAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCATTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAAGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGCA
ATTTCAATGGGACTTGCTTGTGGGGTTTTCATATATGTTGCCATCAACCA
TCTCATTGCCTAAGGGTTTAAGCCACAAAATAAATGTTACTTTGACGCTC
CTTTCTTTAAGTTTCTTGCTGTGCTTAGTGGGAGTTGGA
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