FC876756

Overview
NameFC876756
Unique NameFC876756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10439 contig Ccv1_Contig10439:6..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 5.920e-100
Identity = 177/203 (87.19%), Postives = 193/203 (95.07%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDAD 618
            RARIRLINQDKNKYNTPKYRFVVR +NKDI AQI+SA+I GD VLA+AY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYEGNVEATGEDYSVEPADTRRPFRALLDVGLI+TTTGNRVFGALKGAL GGLDIPHSDKRFAG++K+G+ LD +VHRKYI+GGHVAAY+ TLMEDEPEKYQSHF+ YIKKGI+AD
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMEDEPEKYQSHFSEYIKKGIEAD 233          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 350.517 bits (898), Expect = 3.971e-96
Identity = 170/203 (83.74%), Postives = 187/203 (92.12%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDAD 618
            RARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVFGALKGAL GGLDIPHSDKRFAGF K+ K LDA++HR YIYGGHV+ Y+  L EDEPEK Q+HF+ YIKKG++A+
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAE 233          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 350.517 bits (898), Expect = 3.971e-96
Identity = 170/203 (83.74%), Postives = 187/203 (92.12%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDAD 618
            RARIRLINQDKNKYNTPKYRFVVRFTNKDI+AQIVSA+I GD V A+AYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGED+SVEP D+RRPFRALLDVGLI+TTTGNRVFGALKGAL GGLDIPHSDKRFAGF K+ K LDA++HR YIYGGHV+ Y+  L EDEPEK Q+HF+ YIKKG++A+
Sbjct:   31 RARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAE 233          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 5.186e-96
Identity = 169/204 (82.84%), Postives = 185/204 (90.69%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDADG 621
            RARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVFGALKGAL GGLDIPHSDKRFAGF KD K LD+D+HRKYIYGGHVA Y+ ++ E+EPEK+Q+HF+ Y+KKGIDADG
Sbjct:   32 RARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADG 235          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 5.186e-96
Identity = 169/204 (82.84%), Postives = 185/204 (90.69%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDADG 621
            RARIRL NQDKNKYNTPKYRFVVRFTNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEGN+EATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVFGALKGAL GGLDIPHSDKRFAGF KD K LD+D+HRKYIYGGHVA Y+ ++ E+EPEK+Q+HF+ Y+KKGIDADG
Sbjct:   32 RARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADG 235          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 4.543e-92
Identity = 166/204 (81.37%), Postives = 181/204 (88.73%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDADG 621
            RARIRL NQDKNKYNTPKYRFV   TNKDI AQIV A I GD V+AAAY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEGNVEATGEDY VEPAD RRPFRALLDVGLI+TTTGNRVFGALKGAL GGLDIPHSDKRFAGF KD K LD+D+HRKYIYGGHVA Y+ ++ E+EPEK+Q+HF+ Y+KKGIDADG
Sbjct:   35 RARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADG 235          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 1.680e-70
Identity = 129/204 (63.24%), Postives = 160/204 (78.43%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVE-PADTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDAD 618
            RAR RL+ QDKNKYNTPKYR V+RFTN DII QI+ A I GD VL +AYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L + D+Y G  +  GED++VE   D  RPFRA LDVGL +TTTGNRVF A+KGA+ GG+DIPHS  RF G+ ++   L+AD  R+YI+GGHV+ Y+  L E++ EKY++HF+ +IK+GI AD
Sbjct:   31 RARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEEDEEKYKAHFSRFIKEGITAD 234          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL5_DUNSA (60S ribosomal protein L5 OS=Dunaliella salina GN=RPL5 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.019e-67
Identity = 125/205 (60.98%), Postives = 159/205 (77.56%), Query Frame = 1
Query:   10 RARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDADG 621
            RAR+RL+ QDKNKYNT KYR VVRF+NK++  QIV + I GD V+AAAY+ ELP YGL+VGLTNY+AAYC GLL+ARR+L  L + D Y+G  E  GEDY+VEP  D  +PF  LLD GL +T+TG++VF A+KGAL GGLDIPH++KRF G++   K LD +V +KYIYGGHVA Y  T+ E+EPEKYQ+HF+ Y++  I+ DG
Sbjct:   31 RARLRLVRQDKNKYNTHKYRLVVRFSNKNVTCQIVYSTIQGDVVMAAAYSKELPNYGLKVGLTNYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRTSTGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQEEEPEKYQAHFSSYVENEIEPDG 233          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL5_LYSTE (60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.125e-65
Identity = 120/204 (58.82%), Postives = 153/204 (75.00%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDADG 621
            AR RL  QDK+KYNTPKYR +VR +NKDI  QI  + I GD ++ AAY+HELP+YG++VGLTNYAAAYCTGLLLARR+LK L++D  Y G  E  G++Y+VE  D     FR  LD GL++TTTG R+FGA+KGA+ GGL+IPHS KRF G+  + K  +ADVHR++I+  H+A Y+ TL E+EPE +Q  F+ YIK GI ADG
Sbjct:   32 ARKRLTVQDKSKYNTPKYRLIVRLSNKDITCQIAYSRIEGDRIVCAAYSHELPKYGIKVGLTNYAAAYCTGLLLARRLLKQLKLDTLYTGTTEVDGDEYNVEEHDDGPGAFRCYLDTGLMRTTTGARIFGAMKGAVDGGLNIPHSTKRFPGYDNESKSFNADVHRQHIFAHHIANYMKTLEENEPENFQRQFSQYIKNGITADG 235          
BLAST of FC876756 vs. ExPASy Swiss-Prot
Match: RL5_HELAN (60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.125e-65
Identity = 122/203 (60.10%), Postives = 155/203 (76.35%), Query Frame = 1
Query:   13 ARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFGALKGALHGGLDIPHSDKRFAGFSKDGKHLDADVHRKYIYGGHVAAYLITLMEDEPEKYQSHFT*YIKKGIDAD 618
            AR RLI QDKNKYNTPKYR VVRF+N+DI  Q+  + I GD +L AAYAHELP+YG++VGLTNYAAAYCTGLLLAR++L  L +D  Y G+ E TGE+++V+P  D    FR  LDVGL++TTTG RVFGA+KGA+ GGL+I HS KRF GF  + K  +ADVHR++I+G HVA Y+  L E++ E Y+  F+ YIK G++AD
Sbjct:   32 ARKRLIAQDKNKYNTPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNAD 234          
The following BLAST results are available for this feature:
BLAST of FC876756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL5_CUCSA5.920e-10087.1960S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH3.971e-9683.7460S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH3.971e-9683.7460S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSJ5.186e-9682.8460S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSI5.186e-9682.8460S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ4.543e-9281.3760S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_SUBDO1.680e-7063.2460S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5_DUNSA1.019e-6760.9860S ribosomal protein L5 OS=Dunaliella salina GN=R... [more]
RL5_LYSTE2.125e-6558.8260S ribosomal protein L5 OS=Lysiphlebus testaceipe... [more]
RL5_HELAN2.125e-6560.1060S ribosomal protein L5 OS=Helianthus annuus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1BH09RM1 EHR Citrus clementina cDNA clone KN0AAN1BH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876756 ID=FC876756; Name=FC876756; organism=Citrus clementina; type=EST; length=621bp
GCACGAGGCAGAGCTAGAATTCGCTTGATTAATCAGGACAAGAATAAGTA
CAACACACCCAAATACCGATTTGTTGTCCGATTCACAAACAAGGACATCA
TTGCACAGATAGTGTCAGCCAACATTGTTGGTGATTCTGTCCTTGCTGCT
GCTTATGCCCATGAGCTTCCTCGTTATGGACTTGAAGTAGGTCTTACAAA
CTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTCTTGA
AGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTACCGGA
GAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTGCTCT
CCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTTGGTG
CTCTGAAGGGAGCATTACATGGTGGATTGGACATTCCTCATAGTGACAAG
AGGTTTGCTGGTTTTTCTAAGGATGGCAAGCATCTGGATGCTGATGTTCA
CCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACCTGATTACATTGA
TGGAAGATGAGCCAGAGAAGTATCAATCTCACTTCACCTAGTACATCAAG
AAAGGAATTGATGCTGATGGC
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