FC876758

Overview
NameFC876758
Unique NameFC876758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: DRG1_XENLA (Developmentally-regulated GTP-binding protein 1 OS=Xenopus laevis GN=drg1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLNKQPPN+ F+KKDKGGIN T+T   + LD +TVK+I +EY+IHNADITLR D TADDLIDV
Sbjct:  171 RLNKQPPNIGFKKKDKGGINLTATCAQSELDNDTVKSILAEYKIHNADITLRSDATADDLIDV 233          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: DRG1_MOUSE (Developmentally-regulated GTP-binding protein 1 OS=Mus musculus GN=Drg1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLN +PPN+ F+KKDKGGIN T+T   + LD ETVK+I +EY+IHNAD+TLR D TADDLIDV
Sbjct:  171 RLNSKPPNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDV 233          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: DRG1_HUMAN (Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLN +PPN+ F+KKDKGGIN T+T   + LD ETVK+I +EY+IHNAD+TLR D TADDLIDV
Sbjct:  171 RLNSKPPNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDV 233          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: DRG1_BOVIN (Developmentally-regulated GTP-binding protein 1 OS=Bos taurus GN=DRG1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLN +PPN+ F+KKDKGGIN T+T   + LD ETVK+I +EY+IHNAD+TLR D TADDLIDV
Sbjct:  171 RLNSKPPNIGFKKKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDV 233          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: 128UP_DROME (GTP-binding protein 128up OS=Drosophila melanogaster GN=128up PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLNK+PPN+ +++KDKGGIN  S V  + LD + VK I SEY+IHNADITLRYD T+DDLIDV
Sbjct:  171 RLNKKPPNIYYKRKDKGGINLNSMVPQSELDTDLVKTILSEYKIHNADITLRYDATSDDLIDV 233          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: YFY7_SCHPO (Uncharacterized GTP-binding protein C9.07c OS=Schizosaccharomyces pombe GN=SPAC9.07c PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.701e-17
Identity = 38/63 (60.32%), Postives = 53/63 (84.13%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLNK+PPN+ F+KK++GGIN T+TV  T++DL+ ++A+CSEYR+++ADI  R D T DDLIDV
Sbjct:  170 RLNKEPPNIVFKKKERGGINITNTVPLTHIDLDEIRAVCSEYRVNSADIAFRCDATIDDLIDV 232          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: DRG1_DICDI (Developmentally-regulated GTP-binding protein 1 homolog OS=Dictyostelium discoideum GN=drg1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTST--VTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLNKQPP +TF+KK+KGGINF+ T  V  T LD ETVKAIC+EY+IHNAD+ LR + T D+ IDV
Sbjct:  171 RLNKQPPPITFKKKEKGGINFSHTPNVNPTQLDSETVKAICAEYKIHNADVILRGNCTVDEFIDV 235          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: RBG1_YEAST (GTP-binding protein RBG1 OS=Saccharomyces cerevisiae GN=RBG1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLNK PP++  +KK+KGGI+ T+TV  T+L  + ++A+ SEYRI++A+I  R D T DDLIDV
Sbjct:  172 RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDV 234          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: Y1326_METJA (Uncharacterized GTP-binding protein MJ1326 OS=Methanocaldococcus jannaschii GN=MJ1326 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  494 VIIYFLDQFD----KLYSFN-RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            V IY LD       +LY+   RL++ PP++  + K++GGIN +STV  T++D +T++AI +EYRIHNAD+ +R D T +  IDV
Sbjct:  169 VDIYTLDHLPVLEKELYNVGIRLDQTPPDVKIKVKERGGINVSSTVPLTHIDEDTIEAILNEYRIHNADVVIREDITLEQFIDV 252          
BLAST of FC876758 vs. ExPASy Swiss-Prot
Match: GTP1_SCHPO (GTP-binding protein 1 OS=Schizosaccharomyces pombe GN=gtp1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 34/63 (53.97%), Postives = 41/63 (65.08%), Query Frame = 2
Query:  542 RLNKQPPNLTFRKKDKGGINFTSTVTNTNLDLETVKAICSEYRIHNADITLRYDXTADDLIDV 730
            RLN+QPPN+T   K  GGI F  TV  T++D +    I  EYRIHNADI +R D T DD ID+
Sbjct:  168 RLNRQPPNVTLTIKKNGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADILIREDITVDDFIDL 230          
The following BLAST results are available for this feature:
BLAST of FC876758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
DRG1_XENLA2.374e-1971.43Developmentally-regulated GTP-binding protein 1 OS... [more]
DRG1_MOUSE1.178e-1868.25Developmentally-regulated GTP-binding protein 1 OS... [more]
DRG1_HUMAN1.178e-1868.25Developmentally-regulated GTP-binding protein 1 OS... [more]
DRG1_BOVIN1.178e-1868.25Developmentally-regulated GTP-binding protein 1 OS... [more]
128UP_DROME3.428e-1866.67GTP-binding protein 128up OS=Drosophila melanogast... [more]
YFY7_SCHPO1.701e-1760.32Uncharacterized GTP-binding protein C9.07c OS=Schi... [more]
DRG1_DICDI3.790e-1766.15Developmentally-regulated GTP-binding protein 1 ho... [more]
RBG1_YEAST9.660e-1353.97GTP-binding protein RBG1 OS=Saccharomyces cerevisi... [more]
Y1326_METJA2.152e-1245.24Uncharacterized GTP-binding protein MJ1326 OS=Meth... [more]
GTP1_SCHPO1.068e-1153.97GTP-binding protein 1 OS=Schizosaccharomyces pombe... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1BH12RM1 EHR Citrus clementina cDNA clone KN0AAN1BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876758 ID=FC876758; Name=FC876758; organism=Citrus clementina; type=EST; length=731bp
GCACGAGGGTTTCTCTGGTTTCATGCCTCCATCTGTTCAGTTGTTTTTTA
ATTTGATGCTAATGCTAATAAATTTTAAACATTTTGTATCTGCTGATTTT
AAAAATTGTGAGCCAATTGTTTTTAGTTGGTTGGCATTCTCTTTTTTTTT
TCTTTCCTAGAAAGTGTTAATAACCAAATTCCCTAAAGGACTTTCTATTG
CTATTTGCAATACGTTAAGCATTCCTTTGATATTTGATAAATCATACAGT
AGTTGGTCCTACTCTTCTCTGTGTAATTTTCTAAAGCTTACTCTATTCAA
CACTACCCAGTGGACCGTGCTTCTTTAATATTCCTTTTAACATCTATCTT
ATGCCTCTTAAGTCATATTTATAACAGTATCTGCATTTGAGAACATAAAT
GTCTTTTTCCCACACTCCAGAACTTATCCTCTTTGCTTTTAGTTTGTTTA
ATTATTATTTTTTTCAATTTAACCTTGACCACCTCACTTTTGTGTAATTA
TATATTTTTTAGATCAATTTGATAAGTTGTATTCTTTTAATAGGTTAAAC
AAACAACCACCTAATCTGACATTCAGGAAGAAAGATAAGGGAGGTATCAA
TTTCACCTCAACAGTTACCAACACAAATCTTGACCTTGAGACTGTGAAGG
CAATATGCAGTGAATACAGAATTCATAATGCTGATATCACTCTGAGATAC
GATGNCACAGCTGATGACCTTATTGATGTCA
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