FC876760

Overview
NameFC876760
Unique NameFC876760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876760_ssr385 microsatellite FC876760_ssr385:385..396. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267 contig Ccv1_Contig9267:105..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.525e-14
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 130
            DDQWIFWVGPF+GA  AA YHQYILRA+AIKALGSFRSNA
Sbjct:  239 DDQWIFWVGPFLGALAAAAYHQYILRASAIKALGSFRSNA 278          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.601e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 130
            DDQWI+WVGPF+GA VAA YHQYILR +AIKALGSFRSNA
Sbjct:  248 DDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA 287          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.601e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 130
            DD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  251 DDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.397e-14
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 130
            DD WIFWVGP +GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  253 DDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALGSFRSNA 292          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.567e-14
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 127
            DD WIFWVGPF+GA  AA YHQY+LRAAAIKALGSFRSN
Sbjct:  241 DDHWIFWVGPFVGALAAAAYHQYVLRAAAIKALGSFRSN 279          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.883e-14
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 2
Query:   14 DQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 130
            + WIFWVGPF+GA +AAFYHQYILRA AIKALGSFRSNA
Sbjct:  252 NHWIFWVGPFVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.291e-13
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 127
            DD WIFW GPFIGA  AA YHQYILRAAAIKALGSFRSN
Sbjct:  241 DDHWIFWAGPFIGALAAAAYHQYILRAAAIKALGSFRSN 279          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.876e-13
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSN 127
            DD WIFWVGPF+GA  AA YHQYILRAAAIKAL SFRSN
Sbjct:  237 DDHWIFWVGPFVGALAAAAYHQYILRAAAIKALASFRSN 275          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.093e-12
Identity = 33/38 (86.84%), Postives = 34/38 (89.47%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRS 124
            DDQWIFWVGP IGA  AAFYHQ+ILRAAAIKALGSF S
Sbjct:  246 DDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSFGS 283          
BLAST of FC876760 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.179e-12
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:   11 DDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 130
            DD WIFWVGPFIGA +AAFYHQ++LRA+  K+LGSFRS A
Sbjct:  244 DDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLGSFRSAA 283          
The following BLAST results are available for this feature:
BLAST of FC876760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PIP27_ARATH1.525e-1487.50Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP27_MAIZE2.601e-1485.00Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP21_MAIZE2.601e-1485.00Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_MAIZE3.397e-1485.00Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP1_ATRCA7.567e-1484.62Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP21_ORYSJ9.883e-1484.62Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP26_ORYSJ1.291e-1387.18Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP28_ARATH2.876e-1384.62Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP24_ARATH1.093e-1286.84Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP23_ARATH3.179e-1275.00Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AE02RM1 EHR Citrus clementina cDNA clone KN0AAN3AE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876760 ID=FC876760; Name=FC876760; organism=Citrus clementina; type=EST; length=429bp
GCACGAGGGGGATGACCAATGGATCTTCTGGGTTGGACCATTCATTGGAG
CTTTCGTTGCTGCATTCTACCACCAATACATTCTCAGGGCAGCAGCCATT
AAGGCTCTTGGATCCTTCAGGAGCAATGCTTAAGCTTTAAATATGATGTC
TGGTGCTTCCAAGGTGAAAAATTTACAGCATGATCAGGAGTGCAAGTCTG
TTACGAAGGCCCTTTAAGAAATCTCTTTTCAAGCTCTTTAGAGGGCCATT
GAATTTGAGCTGAATTAGAGGGCTATTGAATTGTAGATATTTGAACATTA
TGCATTTTATGCCTATGCTTTATCTATGTGTAAGGGTGGATTTTGGTATC
CCATTTTAATTTTTTTCTTTGGGTGTGTTTATAAGTGGTGGTGGTGTTTT
TTATATATCCTATTTCTCTATATTTTTCT
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