FC876773

Overview
NameFC876773
Unique NameFC876773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876773_ssr81 microsatellite FC876773_ssr81:81..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10389 contig Ccv1_Contig10389:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT14_ORYSJ (Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.777e-39
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = 3
Query:  162 LLPGDSSHHGIYKGEPSEFSQDMPKD----GGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRR 461
            ++P DSSHHGI +  P   +Q   ++    G  WYFSRKE+EE+SPSRRDGIDLK+E+YLRKSYCTFLQDLGM+LKVPQ+TIATAI+FCHRFYLRQSH KNDRR
Sbjct:    3 MMPSDSSHHGIVENSPYRTTQGRNEETGELGASWYFSRKEIEENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRR 106          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT13_ORYSJ (Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.401e-36
Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = 3
Query:  153 MANLLPGDSSHHGIYKGEPSEFSQDMPKDGGR----WYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRR 461
            M  +   DSSHHGI +  P     D   +GG+    WYFSRKE+EE+S SRRDGIDLK+E+YLRKSYCTFLQDLGM+LKVPQ+TIATAI+FCHRF+LRQSH KNDRR
Sbjct:    1 MDGIQTSDSSHHGIVENSPYRTPYDRYAEGGQLGASWYFSRKEIEENSLSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRR 107          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT15_ARATH (Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.922e-34
Identity = 69/103 (66.99%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  153 MANLLPGDSSHHGIYKGEPSEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRR 461
            MA +L G+ S+        S  S +  ++  RWYF RKE+EE+SPSR DGIDLK+ETYLRKSYCTFLQDLGM+LKVPQ+TIATAIIFCHRF+ RQSH KNDRR
Sbjct:    1 MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRR 103          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT14_ARATH (Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.219e-33
Identity = 68/103 (66.02%), Postives = 79/103 (76.70%), Query Frame = 3
Query:  153 MANLLPGDSSHHGIYKGEPSEFSQDMPKDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRR 461
            MA +L GD S         S  S +   +  RWYF RKE+EE+SPSR D IDLK+ETYLRKSYCTFLQDLGM+LKVPQ+TIATAIIFCHRF++RQSH +NDRR
Sbjct:    1 MAGVLAGDCSFGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFIRQSHARNDRR 103          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT12_ARATH (Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26
Identity = 54/71 (76.06%), Postives = 63/71 (88.73%), Query Frame = 3
Query:  249 WYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKNDRR 461
            W+FSR+E+E +SPSRRDGIDLK ET LR SYCTFL+ LG +LKVPQ+TIATAI FCHRF+LRQSH KNDR+
Sbjct:   31 WFFSREEIERNSPSRRDGIDLKTETRLRDSYCTFLEILGERLKVPQVTIATAIFFCHRFFLRQSHAKNDRQ 101          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT13_ARATH (Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 3
Query:  246 RWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKND 455
            +WYFSR+E+E  SPSR+DGIDL +E++LR SYCTFLQ LGMKL V Q+TI+ A++ CHRFY+RQSH KND
Sbjct:   33 KWYFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHRFYMRQSHAKND 102          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT11_ORYSJ (Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYCT1-1 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.253e-21
Identity = 41/71 (57.75%), Postives = 57/71 (80.28%), Query Frame = 3
Query:  243 GRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKND 455
            G WY +R E+E  SPSRRDG+   +E  LR +YC+F++D+G++L++PQ+TIATA + CHRFYLRQSH KN+
Sbjct:    7 GSWYVTRDEVERGSPSRRDGVGAAKEAELRATYCSFIRDVGLRLQLPQVTIATATLLCHRFYLRQSHAKNE 77          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT12_ORYSJ (Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYCT1_2 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 42/68 (61.76%), Postives = 58/68 (85.29%), Query Frame = 3
Query:  249 WYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKN 452
            WYF+R+ELE+ SPSR+DGI    E+ +R+ YC+F++D+G++LK+PQ+TIATAI+FCHRFYL QS  KN
Sbjct:   18 WYFTREELEKFSPSRKDGITEIMESEIRQLYCSFIRDVGIRLKLPQMTIATAIMFCHRFYLYQSLAKN 85          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCT11_ARATH (Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CYCT1-1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  249 WYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTKND 455
            WY +R+ +E+ SPSR DGI+LK ET+ R SY +FLQ+LG +L  PQ TIATAI+ C RF+ RQS TKND
Sbjct:    7 WYNTREAIEKTSPSRLDGINLKEETFQRWSYTSFLQELGQRLNNPQKTIATAIVLCQRFFTRQSLTKND 75          
BLAST of FC876773 vs. ExPASy Swiss-Prot
Match: CCNT1_PANTR (Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  234 KDGGRWYFSRKELEEDSPSRRDGIDLKRETYLRKSYCTFLQDLGMKLKVPQITIATAIIFCHRFYLRQSHTK 449
            K+  RWYF+R++LE +SPSRR G+D  +E   R+     LQD+G +L V Q+TI TAI++ HRFY+ QS T+
Sbjct:    6 KNNKRWYFTREQLE-NSPSRRFGVDPDKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTQ 76          
The following BLAST results are available for this feature:
BLAST of FC876773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CCT14_ORYSJ8.777e-3971.15Cyclin-T1-4 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT13_ORYSJ1.401e-3668.22Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT15_ARATH2.922e-3466.99Cyclin-T1-5 OS=Arabidopsis thaliana GN=CYCT1-5 PE=... [more]
CCT14_ARATH4.219e-3366.02Cyclin-T1-4 OS=Arabidopsis thaliana GN=CYCT1-4 PE=... [more]
CCT12_ARATH1.717e-2676.06Cyclin-T1-2 OS=Arabidopsis thaliana GN=CYCT1-2 PE=... [more]
CCT13_ARATH6.106e-2468.57Cyclin-T1-3 OS=Arabidopsis thaliana GN=CYCT1-3 PE=... [more]
CCT11_ORYSJ8.253e-2157.75Cyclin-T1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT12_ORYSJ3.467e-1961.76Cyclin-T1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCT11_ARATH2.485e-1760.87Putative cyclin-T1-1 OS=Arabidopsis thaliana GN=CY... [more]
CCNT1_PANTR3.713e-1350.00Cyclin-T1 OS=Pan troglodytes GN=CCNT1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AF05RM1 EHR Citrus clementina cDNA clone KN0AAN3AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876773 ID=FC876773; Name=FC876773; organism=Citrus clementina; type=EST; length=671bp
GCACGAGGCTTTTGCAGGTTCAATTGCTTTAAATTATTGGAATATTGAGT
CGCTCTGCTAATTTTTTAAGGAAGGCGATGCTGTCTGTCTGTCTGTCAGC
CAGATAGACCATTGATATTAGTATTTGACGGAGCTGGTTGGCCAGAATGC
AAATGGCTAACTTGCTGCCTGGCGATTCCTCACATCATGGAATTTATAAA
GGTGAGCCGTCTGAGTTTTCTCAGGATATGCCAAAGGATGGTGGCCGTTG
GTATTTCTCTAGAAAAGAACTTGAGGAAGATTCCCCATCTAGACGAGATG
GCATTGACTTGAAAAGGGAGACTTATCTACGCAAGTCATACTGTACATTT
CTGCAAGACTTGGGCATGAAACTTAAAGTACCCCAGATAACAATTGCTAC
GGCAATAATATTCTGTCACCGGTTCTACCTTCGTCAATCGCATACAAAGA
ATGATAGGAGGGTGAGTTATGCTTATCCACAACATTTTGAGTATTTATCT
TTTCTTCTGGAGAAATATATTGTTATCACCTGGCAGCATTTATGGTTGAA
TATTTAATGTAATCTGTTAAAAAAATTTCTGATCACATCTGTAGTGTTAT
TAGTAGCATCATGTAATGTAATTTCAGATCCTGATATGATCTAGAATAAA
GACGCCAGAGCTGTTTTTGGT
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