FC876795

Overview
NameFC876795
Unique NameFC876795
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length768
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig384 contig Ccv1_Contig384:115..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876795 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 2
Query:  368 SSGEDGLDEVASDKLQHEPGPVSETRALQSDQEVSTLILSRKSLMLPDTGHLLPSDQERSISSITSEKASQTTDIIPAL--QTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD 766
            S+    +D+V +   + E  PV+ TR     + + +        ++P   H + S  E  ++S  SEKA + ++   AL  Q+G E ++P IREKV EDGYNWRKYGQKLV+GNEFVRSYY+CTHP C AKKQL+
Sbjct:   17 SNETKAVDDVVATTDKAEVIPVAVTRTETVVESLESTDCKELEKLVP---HTVASQSEVDVASPVSEKAPKVSESSGALSLQSGSEGNSPFIREKVMEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLE 148          
BLAST of FC876795 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.629e-13
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 2
Query:  527 PSDQERSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD 766
            P  Q R+    TS+   +T++I       +  S P   +K ++DGYNWRKYGQK V+G++F RSYYKCTHP C  KK+++
Sbjct:  212 PRSQIRASVQETSQGQRETSEI----SVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVE 287          
BLAST of FC876795 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.379e-12
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  560 TSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKK 757
            TS      +D   ++QT Q  S  +    +++DGYNWRKYGQK V+G+EF RSYYKCTHP C  KK
Sbjct:  180 TSSDIPAGSDQEESIQTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKK 245          
BLAST of FC876795 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.072e-12
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 2
Query:  650 SEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD 766
            ++DGYNWRKYGQKLV+G+E+ RSYYKCTHP C AKK+++
Sbjct:  177 ADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVE 215          
BLAST of FC876795 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.240e-12
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 2
Query:  452 QSDQEVSTLILSRKSLMLPDTGHLLPSDQERSISSITSEKASQTTDIIPALQTGQEVST-------PTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD 766
            Q+  +V+   +   + M P T +  PS Q +S SS   +    T+  +PA +   +V+        P   +K ++DGYNWRKYGQK V+G+EF RSYYKCT+P C  KK+++
Sbjct:  158 QALAQVTAQAVQANANMQPQTEYPPPS-QVQSFSS--GQAQIPTSAPLPAQRETSDVTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVE 266          
BLAST of FC876795 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.167e-11
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  542 RSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD 766
            +S+S  T          +P+  T  E ST    ++ S DGYNWRKYGQK V+G+E  RSYYKCTHP+C  KK+++
Sbjct:  132 KSVSQGTHRAGPNLVQKVPSF-TESETSTG---DRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVE 202          
BLAST of FC876795 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.991e-11
Identity = 27/39 (69.23%), Postives = 35/39 (89.74%), Query Frame = 2
Query:  650 SEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD 766
            +EDGYNWRKYGQKLV+G+E+ RSYYKCT+P C  KK+++
Sbjct:  272 AEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVE 310          
BLAST of FC876795 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.794e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 2
Query:  644 KVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD 766
            K S+DGYNWRKYGQK V+G+E  RSY+KCT+P CL KK+++
Sbjct:  114 KTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVE 154          
The following BLAST results are available for this feature:
BLAST of FC876795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
WRKY1_ARATH5.968e-2445.19WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRKY3_ARATH3.629e-1345.00Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK20_ARATH1.379e-1251.52Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRK34_ARATH3.072e-1271.79Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRKY4_ARATH5.240e-1238.39Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK44_ARATH1.167e-1146.67WRKY transcription factor 44 OS=Arabidopsis thalia... [more]
WRKY2_ARATH1.991e-1169.23Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK26_ARATH5.794e-1165.85Probable WRKY transcription factor 26 OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3AH06RM1 EHR Citrus clementina cDNA clone KN0AAN3AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876795 ID=FC876795; Name=FC876795; organism=Citrus clementina; type=EST; length=768bp
GCACGAGGATCAAAGCTCACCCCGCTCTCTCTCCCCTCCTCTGTTCTCTT
CTCCTCTCTCACGTACTCTAAAATTAACTAATCAACCTCTGTAGGGTTGA
CTCAACGCTCGAGTCTCGAGCCGCCGAGATCCGCGGCTGTGATCGAATCA
AAAGTCAACGGTTGTACGTGAAATTGTAGCACGTGATCATGACCGTGTTG
CTAGGGCTTGCTTGTCTGGTGCCTTGAACTCGACAACGAAGCTGGTTTGG
GTCACCAGCACTTCACCTTTATTTTCAGCCAAGGTGAATTCAGTGATGAC
TAACTTGAGCTTGAGTTGATCTGAACTGTTCTCTTATTGACAAACAAATC
TCCAAGTCGATATGGTTTCTTCTGGGGAAGATGGATTGGATGAAGTTGCT
TCTGATAAATTGCAGCATGAACCAGGCCCTGTTAGTGAAACTCGTGCATT
GCAATCTGATCAAGAGGTCAGCACTCTAATACTATCAAGGAAAAGTCTAA
TGCTACCTGATACTGGTCACTTGCTGCCATCGGATCAAGAAAGAAGCATT
TCTTCTATAACATCCGAGAAAGCATCACAGACTACTGACATCATCCCTGC
ATTACAAACTGGTCAGGAAGTGAGCACTCCTACAATACGTGAGAAAGTAT
CAGAGGATGGATATAACTGGCGAAAGTATGGGCAAAAACTTGTTAGAGGG
AATGAATTTGTACGAAGCTATTACAAATGTACGCATCCAAGATGCCTAGC
TAAAAAGCAACTGGATTG
back to top