FC876829

Overview
NameFC876829
Unique NameFC876829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10406 contig Ccv1_Contig10406:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876829 vs. ExPASy Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.390e-16
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  276 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            D+ T++C +C + IP  N  +H  HC RN+  C +C +  P+   E H    H  V C +C++ +E+ +L  H+   CP R+  C  C+  L  + L EH+
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHE 106          

HSP 2 Score: 20.7866 bits (42), Expect = 6.390e-16
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  661 EVCGNRTELC 690
            + CG RTELC
Sbjct:  107 DYCGARTELC 116          
BLAST of FC876829 vs. ExPASy Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.402e-15
Identity = 33/101 (32.67%), Postives = 53/101 (52.48%), Query Frame = 3
Query:  276 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H  V C +C++ +E+ +L  H+   CP R+  C  C+  L  + L EH+
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHE 106          

HSP 2 Score: 20.7866 bits (42), Expect = 1.402e-15
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  661 EVCGNRTELC 690
            + CG RTELC
Sbjct:  107 DYCGARTELC 116          
BLAST of FC876829 vs. ExPASy Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.753e-15
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 3
Query:  273 SDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            +D+ T++C +C + IP  N  +H  HC RN+  C VC +  P+   E H    H  V C +C++ +E+  L  H+   CP R+  C  C+  L  + L +H+
Sbjct:    6 NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTC-KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHE 106          

HSP 2 Score: 20.7866 bits (42), Expect = 6.753e-15
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  661 EVCGNRTELC 690
            + CG RTELC
Sbjct:  107 DYCGARTELC 116          
BLAST of FC876829 vs. ExPASy Swiss-Prot
Match: XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.160e-14
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  291 ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            +C +C R + S+N  LH A+C R L  C  C + VP++  EEH    H  V C+ C ++M++  L  HK   C +R V C FC+  +    L  H+
Sbjct:    7 VCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHE 102          

HSP 2 Score: 21.557 bits (44), Expect = 1.160e-14
Identity = 7/8 (87.50%), Postives = 8/8 (100.00%), Query Frame = 1
Query:  667 CGNRTELC 690
            CG+RTELC
Sbjct:  105 CGSRTELC 112          
BLAST of FC876829 vs. ExPASy Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.481e-14
Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = 3
Query:  276 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            D+ +++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H    CP R+  C  C+  L  V L EH+
Sbjct:    7 DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTC-KCNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHE 106          

HSP 2 Score: 20.7866 bits (42), Expect = 1.481e-14
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  661 EVCGNRTELC 690
            + CG RTELC
Sbjct:  107 DYCGARTELC 116          
BLAST of FC876829 vs. ExPASy Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.924e-14
Identity = 33/101 (32.67%), Postives = 51/101 (50.50%), Query Frame = 3
Query:  276 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            D+  ++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H    CP R+  C  C+  L  V L EH+
Sbjct:    7 DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTC-KCNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHE 106          

HSP 2 Score: 20.7866 bits (42), Expect = 1.924e-14
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 1
Query:  661 EVCGNRTELC 690
            + CG RTELC
Sbjct:  107 DYCGARTELC 116          
BLAST of FC876829 vs. ExPASy Swiss-Prot
Match: XAF1_BOVIN (XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  288 KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFP--LPAVDLAEH 575
            ++C +C R + S+++ LH AHC   L  C  C + V +   EEH    H  V C+ C +++ +  L  H+ + C +R V C FC+    L  VDL EH
Sbjct:    6 QVCRNCKRRVASNHLGLHEAHCLMYLVLCPECKEPVLQHEMEEHCQGGHQQVGCAMCQQSVPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEH 103          
The following BLAST results are available for this feature:
BLAST of FC876829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TRAD1_MACFA6.390e-1632.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_HUMAN1.402e-1532.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_BOVIN6.753e-1532.35TRAF-type zinc finger domain-containing protein 1 ... [more]
XAF1_HUMAN1.160e-1435.42XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 P... [more]
TRAD1_MOUSE1.481e-1432.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_RAT1.924e-1432.67TRAF-type zinc finger domain-containing protein 1 ... [more]
XAF1_BOVIN1.501e-1234.69XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1CD10RM1 EHR Citrus clementina cDNA clone KN0AAN1CD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876829 ID=FC876829; Name=FC876829; organism=Citrus clementina; type=EST; length=694bp
GCACGAGGAACCAAAGTAATCAAAATCTCCTCATTCCTCAGACACGAAGC
CTCCCTTCCCAATTTTTTTTTTTAAAAAAAAAAAAAAAAACTTGTTTTAT
TTCTTATTTTATTCTCCCCCTAATTTTCTGAGAAATCCATAAGACAGCAT
CTAGCGAGAACAAGACTGCGACATCACACAAACTTCTTCTCTCTCTACCT
AAAAAGTCTTTATTTCGATTGCAGAGCTACAACGTCGTCGTATTGATTGA
TCGTATCGCGATGGCAATGACTTCTGATGAAACCACAAAAATATGCAGTC
ACTGTGACAGAGCTATACCGTCTTCAAATATTGATTTGCATTTTGCACAT
TGCTCGCGGAATCTGGAACGATGTAAAGTATGTGGTGACATGGTTCCAAG
GAAATATGCTGAGGAGCACTTCTTAAATACCCATGCCCCGGTGGCCTGTT
CACAGTGCAGCGAGACAATGGAGCGTGAAATTTTAGCCATCCATAAAGGT
GAAAATTGCCCGCAAAGGATTGTCACTTGCGACTTTTGTGAGTTTCCACT
GCCTGCAGTTGATCTGGCCGAGCATCAGGTGGCAATCGTCAATAATTTTG
AAAATGGAAAGACAATATCTTCCTACTTGGGTGTGATGCTTTGTTGCTTT
GTTATTGTACGAAGTCTGTGGGAATCGCACAGAACTTTGTCATC
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