FC876839

Overview
NameFC876839
Unique NameFC876839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876839_ssr139 microsatellite FC876839_ssr139:139..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5080 contig Ccv1_Contig5080:256..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39
Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 2
Query:  377 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            MFW+NQMQEIE T DFKNH+LPLARIKKIMKADEDV MISAEAPVIFAKACEMFILELTLR+ IHTEENKRRTL+ NDIAAAISRTDVFD
Sbjct:   57 MFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFD 146          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.721e-36
Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 2
Query:  380 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            FW NQ +EIE+T DFKNHSLPLARIKKIMKADEDV MISAEAPV+FA+ACEMFILELTLRS  HTEENKRRTL+ NDIAAA++RTD+FD
Sbjct:   62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFD 150          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.540e-36
Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = 2
Query:  380 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            FW  Q +EIE+T DFKNHSLPLARIKKIMKADEDV MISAEAPV+FA+ACEMFILELTLRS  HTEENKRRTL+ NDIAAA++RTD+FD
Sbjct:   52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFD 140          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.903e-35
Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 2
Query:  377 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            MFW+ Q QEIEQ  DFKNH LPLARIKKIMKADEDV MISAEAP++FAKACE+FILELT+RS +H EENKRRTL+ NDIAAAI+RTD+FD
Sbjct:   59 MFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 148          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.238e-35
Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 2
Query:  377 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            +FW+ Q QEIEQ  DFKNH LPLARIKKIMKADEDV MISAEAP++FAKACE+FILELT+RS +H EENKRRTL+ NDIAAAI+RTD+FD
Sbjct:   46 LFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 135          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29
Identity = 70/154 (45.45%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  206 YPPYHTAPLVASGTPAVAVPSPTQP------PSTFASSPXXXXXXXXXXXXXXXXXXXXXXXXM-FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            YP  + +    +GTPA++ PS T P      P+T  S+P                          FWS+Q+++I +T DFK H LPLARIKKIMK+D+DV  IS+EAP++FAKACE+ ILE+T RS +HTE NKRRTL+  DI  ++SR + FD
Sbjct:  187 YPSLNDSSSNGNGTPALSSPSSTTPHPTTPHPTTPTSTPNQRFQSNGSSSFQNQLQNHLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFD 340          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  380 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            FW   M+EI      DF+   LPLARIKKIMK DEDV MISAEAPV+FAKA ++FI ELTLR+ IHTE+NKRRTL+ NDIA AI++ D FD
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 112          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  380 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            FW   M+EI      DF+   LPLARIKKIMK DEDV MISAEAPV+FAKA ++FI ELTLR+ IHTE+NKRRTL+ NDIA AI++ D FD
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 112          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  380 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            FW   M+EI      DF+   LPLARIKKIMK DEDV MISAEAPV+FAKA ++FI ELTLR+ IHTE+NKRRTL+ NDIA AI++ D FD
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 112          
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  380 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646
            FW   M+EI      DF+   LPLARIKKIMK DEDV MISAEAPV+FAKA ++FI ELTLR+ IHTE+NKRRTL+ NDIA AI++ D FD
Sbjct:   22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 112          
The following BLAST results are available for this feature:
BLAST of FC876839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC2_ARATH2.836e-3990.00Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC9_ARATH1.721e-3683.15Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH8.540e-3682.02Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC4_ARATH1.903e-3580.00Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC1_ARATH4.238e-3578.89Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC_DICDI7.742e-2945.45Nuclear transcription factor Y subunit gamma OS=Di... [more]
NFYC_RAT5.193e-2565.93Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB5.193e-2565.93Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_MOUSE5.193e-2565.93Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN5.193e-2565.93Nuclear transcription factor Y subunit gamma OS=Ho... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CE05RM1 EHR Citrus clementina cDNA clone KN0AAN1CE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876839 ID=FC876839; Name=FC876839; organism=Citrus clementina; type=EST; length=648bp
GCACGAGGCTCTCTTAGGGTTTCTGCTAACTCAATAAGCTCTTCTTGAAG
ATTCAGCTCGAGCAATCATATTGTGATGAGAATATAGCTTGAAGAGGAAA
AGTTTTAAAAAATTGGGCATGGATCAATCAGATCAAACACAACAACAACA
ACAGCAACAGCAGCAGCCTGTGATGGGGGTTGTAGCTGGTGCTGGTCAGA
TGTCATATCCTCCCTACCATACGGCTCCTTTGGTGGCTTCTGGTACTCCT
GCTGTGGCCGTCCCCTCCCCAACCCAGCCTCCATCTACTTTCGCCAGTTC
TCCGCACCAGCTTGCCTACCAACAAGCCCAGCACTTTCACCACCAACAGC
AGCAGCAACAACAGCAGCATCTTCAAATGTTCTGGTCCAATCAAATGCAA
GAAATTGAGCAAACGGCCGACTTCAAGAATCACAGCCTCCCACTTGCTAG
GATCAAGAAAATTATGAAAGCTGATGAAGATGTGATAATGATTTCAGCAG
AGGCCCCTGTCATATTTGCCAAGGCTTGTGAGATGTTTATTTTGGAACTA
ACTCTGCGGTCTTGAATCCACACAGAAGAGAATAAAAGGAGAACACTGCG
AAACAATGATATAGCCGCTGCCATTTCAAGGACTGATGTTTTTGATTT
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