FC876839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 2.836e-39 Identity = 81/90 (90.00%), Postives = 85/90 (94.44%), Query Frame = 2 Query: 377 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 MFW+NQMQEIE T DFKNH+LPLARIKKIMKADEDV MISAEAPVIFAKACEMFILELTLR+ IHTEENKRRTL+ NDIAAAISRTDVFD Sbjct: 57 MFWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFD 146
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 1.721e-36 Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 2 Query: 380 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 FW NQ +EIE+T DFKNHSLPLARIKKIMKADEDV MISAEAPV+FA+ACEMFILELTLRS HTEENKRRTL+ NDIAAA++RTD+FD Sbjct: 62 FWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFD 150
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.540e-36 Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = 2 Query: 380 FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 FW Q +EIE+T DFKNHSLPLARIKKIMKADEDV MISAEAPV+FA+ACEMFILELTLRS HTEENKRRTL+ NDIAAA++RTD+FD Sbjct: 52 FWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFD 140
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 1.903e-35 Identity = 72/90 (80.00%), Postives = 81/90 (90.00%), Query Frame = 2 Query: 377 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 MFW+ Q QEIEQ DFKNH LPLARIKKIMKADEDV MISAEAP++FAKACE+FILELT+RS +H EENKRRTL+ NDIAAAI+RTD+FD Sbjct: 59 MFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 148
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 4.238e-35 Identity = 71/90 (78.89%), Postives = 81/90 (90.00%), Query Frame = 2 Query: 377 MFWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 +FW+ Q QEIEQ DFKNH LPLARIKKIMKADEDV MISAEAP++FAKACE+FILELT+RS +H EENKRRTL+ NDIAAAI+RTD+FD Sbjct: 46 LFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFD 135
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_DICDI (Nuclear transcription factor Y subunit gamma OS=Dictyostelium discoideum GN=nfyc-1 PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 7.742e-29 Identity = 70/154 (45.45%), Postives = 94/154 (61.04%), Query Frame = 2 Query: 206 YPPYHTAPLVASGTPAVAVPSPTQP------PSTFASSPXXXXXXXXXXXXXXXXXXXXXXXXM-FWSNQMQEIEQTADFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 YP + + +GTPA++ PS T P P+T S+P FWS+Q+++I +T DFK H LPLARIKKIMK+D+DV IS+EAP++FAKACE+ ILE+T RS +HTE NKRRTL+ DI ++SR + FD Sbjct: 187 YPSLNDSSSNGNGTPALSSPSSTTPHPTTPHPTTPTSTPNQRFQSNGSSSFQNQLQNHLENKLSSFWSSQLRDIHKTEDFKTHELPLARIKKIMKSDKDVNKISSEAPILFAKACEILILEMTHRSWVHTEMNKRRTLQRTDIINSLSRCETFD 340
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25 Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 2 Query: 380 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 FW M+EI DF+ LPLARIKKIMK DEDV MISAEAPV+FAKA ++FI ELTLR+ IHTE+NKRRTL+ NDIA AI++ D FD Sbjct: 22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 112
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25 Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 2 Query: 380 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 FW M+EI DF+ LPLARIKKIMK DEDV MISAEAPV+FAKA ++FI ELTLR+ IHTE+NKRRTL+ NDIA AI++ D FD Sbjct: 22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 112
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25 Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 2 Query: 380 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 FW M+EI DF+ LPLARIKKIMK DEDV MISAEAPV+FAKA ++FI ELTLR+ IHTE+NKRRTL+ NDIA AI++ D FD Sbjct: 22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 112
BLAST of FC876839 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25 Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 2 Query: 380 FWSNQMQEIEQTA--DFKNHSLPLARIKKIMKADEDVIMISAEAPVIFAKACEMFILELTLRS*IHTEENKRRTLRNNDIAAAISRTDVFD 646 FW M+EI DF+ LPLARIKKIMK DEDV MISAEAPV+FAKA ++FI ELTLR+ IHTE+NKRRTL+ NDIA AI++ D FD Sbjct: 22 FWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 112 The following BLAST results are available for this feature:
BLAST of FC876839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876839 ID=FC876839; Name=FC876839; organism=Citrus clementina; type=EST; length=648bpback to top |