FC876843

Overview
NameFC876843
Unique NameFC876843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length564
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10447 contig Ccv1_Contig10447:4..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876843 vs. ExPASy Swiss-Prot
Match: IM30_PEA (Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 90/158 (56.96%), Postives = 109/158 (68.99%), Query Frame = 1
Query:   94 MAAKSQIVTGF-TMPMTPAPXXXXXXXXXXLCMVKKPLTTSFFNGG-VGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLLKMRHATAQMLASHKRLQNK*KSAEQASEDWYRKSHLALQK 561
            M  K QI +G  + P+ P+             ++KKPL T+ F    V  LK   +RIA   R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQA+LEMNDDL KMR ATAQ+LAS KRL+NK K+A+QASE+WYRK+ LALQK
Sbjct:    1 MTTKFQIFSGLPSAPLQPSSS-----------LLKKPLATTLFGTRPVDTLKFRVMRIAKPVR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQK 141          
BLAST of FC876843 vs. ExPASy Swiss-Prot
Match: IM30_ARATH (Probable membrane-associated 30 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At1g65260 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.112e-35
Identity = 84/157 (53.50%), Postives = 106/157 (67.52%), Query Frame = 1
Query:   94 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLLKMRHATAQMLASHKRLQNK*KSAEQASEDWYRKSHLALQK 561
            MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ ++EMN DL KMR ATAQ+LAS K+LQNK K+A+Q+S+DWY+++ LAL K
Sbjct:    1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACDNRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAK 152          
BLAST of FC876843 vs. ExPASy Swiss-Prot
Match: IM30_ORYSJ (Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.349e-32
Identity = 75/120 (62.50%), Postives = 92/120 (76.67%), Query Frame = 1
Query:  202 LTTSFFNGGVGALKVTRLRIAPSSRSYCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLLKMRHATAQMLASHKRLQNK*KSAEQASEDWYRKSHLALQK 561
            L TSF NG V +L++ ++R +  +R  C          R NL DR +RVVKSYANA+LSSFEDPEKIL+QA+LEMNDDL KMR ATAQ+LAS KRL+NK K+AEQAS+DWYR++ LALQK
Sbjct:   27 LRTSFLNGSV-SLRLIQVRQSNVNRFKCN-------GIRSNLLDRFSRVVKSYANAVLSSFEDPEKILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQK 138          
BLAST of FC876843 vs. ExPASy Swiss-Prot
Match: Y617_SYNY3 (Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803) GN=sll0617 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.013e-12
Identity = 34/79 (43.04%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  319 MNLFDRLARVVKSYANAILSSFEDPEKILEQALLEMNDDLLKMRHATAQMLASHKRLQNK*KSAEQASEDWYRKSHLAL 555
            M LFDRL RVV++  N ++S  EDPEK+LEQA+++M +DL+++R A A+ +A  KR + +     Q ++ W  ++ LAL
Sbjct:    1 MGLFDRLGRVVRANLNDLVSKAEDPEKVLEQAVIDMQEDLVQLRQAVARTIAEEKRTEQRLNQDTQEAKKWEDRAKLAL 79          
The following BLAST results are available for this feature:
BLAST of FC876843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
IM30_PEA3.458e-3756.96Membrane-associated 30 kDa protein, chloroplastic ... [more]
IM30_ARATH1.112e-3553.50Probable membrane-associated 30 kDa protein, chlor... [more]
IM30_ORYSJ3.349e-3262.50Probable membrane-associated 30 kDa protein, chlor... [more]
Y617_SYNY31.013e-1243.04Uncharacterized protein sll0617 OS=Synechocystis s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1CE12RM1 EHR Citrus clementina cDNA clone KN0AAN1CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876843 ID=FC876843; Name=FC876843; organism=Citrus clementina; type=EST; length=564bp
GCACGAGGAATTTCTCGTCTTCTATCCAAAAGCACTCTGAAAACCAATCG
TTCTGTTTCCTGACAATAATTGAACTTGTGGGCATCCCGCAGAATGGCCG
CAAAGTCACAGATAGTTACGGGATTCACCATGCCCATGACACCAGCGCCG
TCCTCTTCTTCCTCGAGCTCTAGCAGCAGTCTCTGCATGGTCAAGAAGCC
CCTCACGACGTCGTTTTTCAACGGCGGAGTGGGAGCTCTAAAAGTTACAA
GGTTAAGGATTGCTCCTTCCAGCCGATCCTATTGTTATAGACAAGGTGGA
GGAGCACTTAATACACGAATGAACCTATTTGATAGGTTAGCAAGAGTTGT
GAAGTCCTATGCAAATGCAATTCTGAGTTCCTTTGAAGATCCAGAGAAGA
TTTTAGAGCAAGCATTACTTGAAATGAATGATGACTTGCTAAAGATGCGC
CACGCCACGGCACAAATGTTGGCATCTCACAAGCGGTTGCAAAATAAGTA
GAAATCTGCAGAGCAAGCTTCAGAGGACTGGTATCGCAAATCACACCTTG
CTCTTCAAAAAAGG
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