FC876872

Overview
NameFC876872
Unique NameFC876872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6884 contig Ccv1_Contig6884:87..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876872 vs. ExPASy Swiss-Prot
Match: BH147_ARATH (Transcription factor bHLH147 OS=Arabidopsis thaliana GN=BHLH147 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.134e-35
Identity = 84/159 (52.83%), Postives = 101/159 (63.52%), Query Frame = 2
Query:  227 QWKSETQQQIYSSKLIQALNHV-------NGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTXXXXXXXXXXXXVNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTAL 682
            +W+SE QQQIYS+KL+ AL  +       + +S S PR GRAVRE ADR LAVAA+G+T WSRAIL+              R+                    +VLRLKAK LPAVQRKV+VL RLVPGCRKQ  PV+LEE TDYIAA+EMQ+R MTA+
Sbjct:   49 KWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAARGKTLWSRAILSKAVKLKFRKHKR-QRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQRKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206          
BLAST of FC876872 vs. ExPASy Swiss-Prot
Match: BH148_ARATH (Transcription factor bHLH148 OS=Arabidopsis thaliana GN=BHLH148 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 85/163 (52.15%), Postives = 98/163 (60.12%), Query Frame = 2
Query:  227 QWKSETQQQIYSSKLIQALNHVN-------GASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTXXXXXXXXXXXX--VNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAE 688
            +W+SE QQ+IYS+KL QAL  V         +SP+A +RG+AVREAADR LAV+A+GRT WSRAIL                                       SVLRL  KS+P V RKVRVLGRLVPGC KQ  PVILEEATDYI ALEMQVRAM +L +
Sbjct:   47 RWRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQ 209          
BLAST of FC876872 vs. ExPASy Swiss-Prot
Match: BH149_ARATH (Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.695e-24
Identity = 70/163 (42.94%), Postives = 88/163 (53.99%), Query Frame = 2
Query:  227 QWKSETQQQIYSSKLIQALNHVNGASPSAPRR---------GRAVREAADRVLAVAAKGRTRWSRAILTXXXXXXXXXXXXVNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAE 688
            +WK+   QQIY+ KL++AL  V   S +              R +R+ ADRVLA +A+G TRWSRAIL               +                        R+K   LPAV+RK+++LGRLVPGCRK   P +L+EATDYIAALEMQVRAM ALAE
Sbjct:   43 RWKTNRVQQIYACKLVEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAKLKKHRKAKKSTGNCKSRKGLTETN---------RIK---LPAVERKLKILGRLVPGCRKVSVPNLLDEATDYIAALEMQVRAMEALAE 193          
BLAST of FC876872 vs. ExPASy Swiss-Prot
Match: BH150_ARATH (Transcription factor bHLH150 OS=Arabidopsis thaliana GN=BHLH150 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.307e-20
Identity = 61/154 (39.61%), Postives = 77/154 (50.00%), Query Frame = 2
Query:  227 QWKSETQQQIYSSKLIQALNHVNGASPSAPRRGRAVREAADRVLAVAAKGRTRWSRAILTXXXXXXXXXXXXVNRVXXXXXXXXXXXXXXXXXXXFSVLRLKAKSLPAVQRKVRVLGRLVPGCRKQPFPVILEEATDYIAALEMQVRAMTALAE 688
            +W++ T Q++YS KL  AL           RR   VR+ AD+VLA  A+G TRWSRAIL                                          + + L AV  +VRVLG LVPGCR+   P +L+E  DYIAALEMQVRAMTAL++
Sbjct:   62 RWRATTAQKVYSLKLYDALQR--------SRRSATVRDTADKVLATTARGATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSG-----------RRRKLSAVGNRVRVLGGLVPGCRRTALPELLDETADYIAALEMQVRAMTALSK 196          
The following BLAST results are available for this feature:
BLAST of FC876872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
BH147_ARATH2.134e-3552.83Transcription factor bHLH147 OS=Arabidopsis thalia... [more]
BH148_ARATH1.171e-3352.15Transcription factor bHLH148 OS=Arabidopsis thalia... [more]
BH149_ARATH1.695e-2442.94Transcription factor bHLH149 OS=Arabidopsis thalia... [more]
BH150_ARATH3.307e-2039.61Transcription factor bHLH150 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3BC09RM1 EHR Citrus clementina cDNA clone KN0AAN3BC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876872 ID=FC876872; Name=FC876872; organism=Citrus clementina; type=EST; length=688bp
TCTCCACTCAACCAAACGACGTCATTTCACCCACCCCGTTCCGTTTTCGT
TCCTGATCTCCTTTTTTATTTCTCTCAAAGGTCTGCACTTGGAATATTTC
CGAATATTATCCACCAAAACGATGTCGTCAACTCTGATATCGAATCCGGT
AACGAACTCTGATCGCTCTAAAAGGAAAAAGAAAAAGAAGGCCTCACAAT
CAAAAGAGTCCAAGCAAAACCAAACCCAATGGAAATCAGAAACTCAGCAA
CAAATCTACTCCTCAAAACTCATCCAAGCTTTAAACCACGTCAACGGCGC
GTCTCCTTCAGCTCCGCGCCGAGGGCGAGCAGTCCGGGAGGCGGCTGACC
GCGTGCTAGCCGTGGCGGCCAAAGGGAGGACCCGGTGGAGTCGAGCCATT
TTGACTCACAGACTCAAGCTCAAGTTTAGAAAACATAAGAAGGTGAATAG
AGTATCGGCTCCTTCAGCAGCCGCTGCGGCCACCGGGAGTGGCCGGTCAA
AGAAGGCGGGATTTAGCGTTTTGAGGCTGAAAGCCAAGAGTTTGCCGGCT
GTTCAACGGAAAGTTCGCGTCCTTGGACGGTTGGTTCCCGGTTGCCGTAA
GCAGCCGTTTCCGGTTATCCTCGAAGAAGCAACTGATTATATAGCTGCTC
TCGAGATGCAGGTGCGTGCCATGACTGCCCTCGCTGAG
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