FC876886

Overview
NameFC876886
Unique NameFC876886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig470 contig Ccv1_Contig470:689..1442. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876886 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.116e-43
Identity = 78/166 (46.99%), Postives = 120/166 (72.29%), Query Frame = -2
Query:  269 IVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN-----NLDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMKPVVKAFMS 751
            I Y + GLH G+ H+ +FVL L+A + +VESLMM +AS+VPN+L GII GAGIQG+ +L  GFFRLPND+P PFW+YP+ YI+FH +A QG ++N+  GL FD+      + GE VL + +Q+ +  SKW++L+++  M++ YR++F  ++KT E + P V+ +++
Sbjct:  498 ICYFMVGLHPGFTHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGFFRLPNDIPKPFWRYPMSYISFHFWALQGQYQNDLRGLTFDSQGSAFKIPGEYVLENVFQIDLHRSKWINLSVILSMIIIYRIIFFIMIKTNEDVTPWVRGYIA 663          
BLAST of FC876886 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 9.466e-35
Identity = 73/178 (41.01%), Postives = 118/178 (66.29%), Query Frame = -2
Query:  236 IVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKF------DNNLDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMKPVVKAFMSVPMKRTTQIME 751
            I Y+L     G+ H+ +F L +F  + ++ESLMM+VAS+VPN+L G+ITGAG+ G++++  GFFRL  DLP  FW+YP+ YI++  +A QG +KN+F GL+F      +  + GE+V+   + +++ YSKW DLA +  ++V YRL+F  ++K  E+  P +KA   +  KRT + ++
Sbjct:  476 ITYNLVKFRPGFSHYAFFCLNIFFSVSVIESLMMVVASVVPNFLMGLITGAGLIGIIMMTSGFFRLLPDLPKIFWRYPVSYISYGSWAIQGGYKNDFLGLEFEPLFPGEPKMTGEEVIEKVFGVKVTYSKWWDLAAVVAILVCYRLLFFVVLKLRERAGPALKA---IQAKRTMRNLD 650          
BLAST of FC876886 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.597e-34
Identity = 72/178 (40.45%), Postives = 118/178 (66.29%), Query Frame = -2
Query:  236 IVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD------NNLDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMKPVVKAFMSVPMKRTTQIME 751
            I Y++     G  H+ +F L +F  + ++ESLMM+VASLVPN+L G+ITGAGI G++++  GFFRL  DLP  FW+YP+ ++++  +A QG +KN+F GL+FD        + GEQV+   + +Q+ +SKW DL+ +  ++V YR++F  ++K  E+ +P +KA   +  KRT + ++
Sbjct:  477 ITYNMVKFRPGVSHWAFFCLNIFFSVSVIESLMMVVASLVPNFLMGLITGAGIIGIIMMTSGFFRLLPDLPKVFWRYPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTGEQVINKIFGVQVTHSKWWDLSAIVLILVCYRILFFIVLKLKERAEPALKA---IQAKRTMKSLK 651          
BLAST of FC876886 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.950e-28
Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = -2
Query:  284 GYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFDN------NLDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIVKTVEKMKPVV 721
            G  HF Y  L L   +  VES MM++AS+VPN+L G++ GAG  G+M+L  GFFR   DLP  FW+YP+ YI +  +A QG +KNE  G+++D+       + GE +L+    +    SKW+DLA++  +++ YR+ F  I+K  EK+ PV+
Sbjct:  481 GGSHFFYNCLDLICAITTVESCMMMIASVVPNFLMGVMLGAGYIGIMVLSAGFFRFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIGVEYDSPLPLVPKMKGELILQTVLGINPESSKWLDLAVVMMILIGYRIAFFAILKFREKVFPVI 632          
BLAST of FC876886 vs. ExPASy Swiss-Prot
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.614e-18
Identity = 47/146 (32.19%), Postives = 78/146 (53.42%), Query Frame = -2
Query:  329 IVYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLKFD----NNLDGEQVLRDNWQLQMG-YSKWVDLAILFGMVVFYRLV 751
            + Y + GL   +    YFVL  F C+L+ E LM+ +A +  +     +T   +  +M+L  G FR+   LP P W YP  YI+FH Y+ +G+ +NE+ G  F      ++ G Q ++ N+Q+     +KW ++ +L  M   YRL+
Sbjct:  528 VFYFMVGLRDDFSLLMYFVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIRTALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQAIQGNYQISPDTNAKWRNMLVLLAMAFGYRLL 673          
BLAST of FC876886 vs. ExPASy Swiss-Prot
Match: AB23G_ARATH (ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.471e-11
Identity = 40/153 (26.14%), Postives = 85/153 (55.56%), Query Frame = -2
Query:  314 VYDLPGLHKGYQHFTYFVLLLFACMLLVESLMMIVASLVPNYLTGIITGAGIQGLMILGGGFFRLPNDLPHPFWKYPLYYIAFHKYAYQGMFKNEFEGLK---FDNN-----LDGEQVLRDNWQLQMGYSKWVDLAILFGMVVFYRLVFLGIV 748
            VY + GL+   Q F++FVL ++  +L+  SL++ ++++ P++++G      + G   L  G+F     +P P W + +YY++ ++Y  + M  NE+  ++   F +      + GE VL++    +   ++W+++ I+    VFYR++  GI+
Sbjct:  467 VYWIVGLNPSIQAFSFFVLCVWLIILMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKEKIPKP-WMF-MYYVSLYRYPLESMVVNEYWSMREECFSSGNMGCLMTGEDVLKERGLDK--DTRWINVGIMLAFFVFYRILCWGIL 615          
The following BLAST results are available for this feature:
BLAST of FC876886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AB11G_ARATH1.116e-4346.99ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB15G_ARATH9.466e-3541.01ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH3.597e-3440.45ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH2.950e-2841.45ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB3G_ARATH3.614e-1832.19ABC transporter G family member 3 OS=Arabidopsis t... [more]
AB23G_ARATH1.471e-1126.14ABC transporter G family member 23 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3BD10RM1 EHR Citrus clementina cDNA clone KN0AAN3BD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876886 ID=FC876886; Name=FC876886; organism=Citrus clementina; type=EST; length=752bp
TTTTAAAGATAATAAAGAAGCAAATCTTGATCATACAAAAATAAAAGTAG
TTAAAGGATGTTTCAAAGCTAAAATATTCTTTCTAATTACATCATTCCTC
TTCCACTCATGAGAACATAGTTTTTTCACCTACTTCAAGCGATTTTACTA
GCTGAACTAACGAATATCCGAAGTCTTTTGTTCACGATCACTTGTAAAGT
ATTTTGTCTTCTTGTGGAGGTGTAGTATACGGATTTTCCATGATTTGAGT
TGTTCGTTTCATGGGCACAGACATAAAAGCTTTAACCACAGGCTTCATCT
TTTCAACTGTCTTGACGATTCCCAAGAATACAAGTCGATAAAAAACCACC
ATACCAAACAAGATAGCAAGATCAACCCACTTAGAATATCCCATTTGCAG
TTGCCAATTATCTCTCAAAACCTGCTCACCATCTAGATTGTTGTCAAATT
TCAGACCTTCAAACTCGTTCTTGAACATTCCTTGATACGCATATTTGTGG
AAAGCAATATAATATAATGGGTATTTCCAAAATGGATGAGGAAGATCATT
TGGCAATCGAAAAAATCCGCCGCCTAATATCATAAGGCCTTGAATTCCAG
CTCCTGTTATTATGCCCGTCAGATAGTTGGGCACCAAGCTTGCAACGATC
ATCATTAGGCTCTCAACGAGCAACATGCAAGCAAACAATAACAAAACAAA
GTATGTGAAGTGTTGATATCCTTTGTGAAGTCCCGGAAGGTCATACACTA
TC
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