FC876893

Overview
NameFC876893
Unique NameFC876893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length607
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10417 contig Ccv1_Contig10417:6..612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 2.487e-79
Identity = 144/183 (78.69%), Postives = 153/183 (83.61%), Query Frame = 2
Query:   65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDK*TMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLQPVEKKQYGWFWV 607
            MPPK+   SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K                LNDLFK+AVSQPKVPVGVDPKSI+CEF+K GQCQKGFKCKFSHDLNVQRKGEKIDIY+DKRD  TMEDWDQETLEKVV SK  EYQQNKPTDIVCKYFL  VEKKQYGWFWV
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGWFWV 183          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.234e-78
Identity = 141/181 (77.90%), Postives = 153/181 (84.53%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDK-*TMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLQPVEKKQYGWFW 604
            MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K                LN+LFK+A+SQPKVPVGVDPKSILCEF+KAGQCQKGFKCKFSHDLN+QRKGEKIDIYSD RD+   M++WDQETLEKVVESK  EY QNKPTDIVCKYFL  VEKKQYGWFW
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWFW 181          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.240e-42
Identity = 93/198 (46.97%), Postives = 124/198 (62.63%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----K*TMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLQPVEKKQYGWFWV 607
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T IVCK+FL+ +E  +YGWFWV
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWV 197          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.240e-42
Identity = 93/198 (46.97%), Postives = 124/198 (62.63%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----K*TMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLQPVEKKQYGWFWV 607
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T IVCK+FL+ +E  +YGWFWV
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWV 197          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.576e-41
Identity = 92/190 (48.42%), Postives = 120/190 (63.16%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----K*TMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLQPVEKKQYGWFWV 607
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V+  KV  G DPKS++C FYK GQC KG KCKFSHDL+++RK EK  +Y D RD    K TME+WD++ LE+VV  K+ E ++ KP T IVCK+FL+ +E  +YGWFWV
Sbjct:   10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDEELEKDTMENWDEKKLEEVVNKKHGEAEKIKPKTQIVCKFFLEAIENNKYGWFWV 198          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.059e-41
Identity = 92/198 (46.46%), Postives = 124/198 (62.63%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----K*TMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLQPVEKKQYGWFWV 607
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T IVC++FL+ +E  +YGWFWV
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWV 197          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.059e-41
Identity = 92/198 (46.46%), Postives = 124/198 (62.63%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----K*TMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLQPVEKKQYGWFWV 607
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T IVC++FL+ +E  +YGWFWV
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWV 197          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.511e-41
Identity = 93/189 (49.21%), Postives = 116/189 (61.38%), Query Frame = 2
Query:   65 MPPKQ-QSKAELAK-KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAG-QCQKGFKCKFSHDLNVQRKGEKIDIYSDKR-DK*TMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLQPVEKKQYGWFW 604
            MPPKQ QSK  + K K+K VEDKTFGLKNKNKSK V  YV  ++  V     Q K    K                   +    + Q KVP+GVDPKSI+CE++K G  C KG +CKF+HDL   RK EKIDIY+D+R D+ TME+WD+  L+ VVE K     + KPT I+CK+FL  +E K+YGWFW
Sbjct:    1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFKQGVTCPKGNRCKFAHDLAAGRKSEKIDIYTDRRKDEDTMENWDEAKLKSVVEKKRTTENKAKPTAIICKFFLDAIESKKYGWFW 189          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: ZC3HF_CHICK (Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.743e-40
Identity = 92/198 (46.46%), Postives = 122/198 (61.62%), Query Frame = 2
Query:   65 MPPKQQS-------KAELAKKQKIVEDKTFGLKNKNKSKNVQ--KYVQNLKQNVQPKPDQS---KVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----K*TMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLQPVEKKQYGWFWV 607
            MPPK+Q        KA+  KK+KI+EDKTFGLKNK  +K  +  K V +L +  Q  P Q+   +                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K TM++WD++ LE+VV  K+ E ++ KP T IVCKYFL  +E  +YGWFWV
Sbjct:    1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQQKFFKAVTHLVKFGQQYPRQAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYIDARDEDLEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKYFLDAIENNKYGWFWV 198          
BLAST of FC876893 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.882e-40
Identity = 90/190 (47.37%), Postives = 118/190 (62.11%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----K*TMEDWDQETLEKVVESKNKEYQQNK-PTDIVCKYFLQPVEKKQYGWFWV 607
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V   KV  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K TME+WD++ LE+VV  K+ E ++ K  T IVCK+FL+ +E  +YGWFWV
Sbjct:   10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDDELEKDTMENWDEKKLEEVVNKKHGEAEKIKAKTQIVCKFFLEAIENNKYGWFWV 198          
The following BLAST results are available for this feature:
BLAST of FC876893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
C3H11_ORYSJ2.487e-7978.69Zinc finger CCCH domain-containing protein 11 OS=O... [more]
C3H21_ARATH1.234e-7877.90Zinc finger CCCH domain-containing protein 21 OS=A... [more]
ZC3HF_HUMAN9.240e-4246.97Zinc finger CCCH domain-containing protein 15 OS=H... [more]
ZC3HF_BOVIN9.240e-4246.97Zinc finger CCCH domain-containing protein 15 OS=B... [more]
ZC3HF_XENTR1.576e-4148.42Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_RAT2.059e-4146.46Zinc finger CCCH domain-containing protein 15 OS=R... [more]
ZC3HF_MOUSE2.059e-4146.46Zinc finger CCCH domain-containing protein 15 OS=M... [more]
ZC3HF_DICDI3.511e-4149.21Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_CHICK1.743e-4046.46Zinc finger CCCH domain-containing protein 15 OS=G... [more]
ZC3HF_XENLA3.882e-4047.37Zinc finger CCCH domain-containing protein 15 OS=X... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CH07RM1 EHR Citrus clementina cDNA clone KN0AAN1CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876893 ID=FC876893; Name=FC876893; organism=Citrus clementina; type=EST; length=607bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAATAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAGG
TTGTGGAATCAAAGAATAAGGAATACCAGCAGAACAAACCTACAGATATT
GTTTGTAAATACTTTTTACAACCTGTGGAGAAGAAACAGTATGGCTGGTT
TTGGGTC
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