FC876894

Overview
NameFC876894
Unique NameFC876894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:14..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876894 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 179.874 bits (455), Expect = 1.231e-44
Identity = 116/221 (52.49%), Postives = 126/221 (57.01%), Query Frame = 2 
Query:  137 DPDFSGS--ARFDKPRISAARVIGASTASFNGLSSLIFRFPPNFVRQLSTKARRNCSNIGVAQIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEITSGDDIALVDG--------LKNVHLEV---------------LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKISA 724
            DPD  GS      + R+ A+  I +S     GLSS I RFPPNFVRQLS KARRNCSNIGVAQI                                  +    A            LK+V  EV               L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+KISA
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQIVAAKWSNNPSSALPSAAAAAATSSASAVSSAASAAAASSAAAAPVAAAPPVVLKSVDEEVVVAEEGIREKIGSVQLTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISA 243
The following BLAST results are available for this feature:
BLAST of FC876894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH1.231e-4452.49Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1CH09RM1 EHR Citrus clementina cDNA clone KN0AAN1CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876894 ID=FC876894; Name=FC876894; organism=Citrus clementina; type=EST; length=725bp
GCACGAGGTTCTTATCATAGAATACAGAGAGAGCAAAGCCGCCGTTCAAT
ACGACGTCGTAATGGCCGTGTCCTCATGTTCGAGTCAAAAAATTTTGTCC
TTCTCTTCTTCATGTTCGTCTTTTGAGTGCCGTTCCGATCCCGACTTCTC
GGGCTCGGCTCGGTTTGATAAACCGAGGATCTCGGCGGCGCGAGTCATCG
GAGCGTCGACGGCGTCGTTTAACGGCCTGTCGTCTCTGATTTTCAGGTTT
CCGCCGAACTTCGTGCGCCAACTTAGCACGAAGGCCAGGAGGAACTGCAG
CAACATCGGCGTGGCGCAAATCGTGGCGGCTTCGTGGTCGAACGGTGTGG
GTTCCGGCTCTAACTCGGCGGCGGCTGCAGCAGCTTCCGCTGCCCCCGCC
CCGCCCGTCCCCGTCGAGATTACGAGCGGCGATGACATCGCGCTTGTTGA
CGGATTGAAGAATGTACATCTGGAGGTCCTCGCTGATTTGAAAAACGAGG
CTTCGTTTTTGAGCTCCGATGGGAGCCTTGCAATTCATGCCGGTGAAAGA
TTAGGTCGTGGTATAGTAACAGATGCAATTACTACCCCAGTGGTGAATAC
TTCTGCTTACTTCTTTAAGAAAACTGCTGAGCTTATTGATTTCAAGGAGA
AACGTCGTGCAAGTTTTGAATATGGGAGGTATGGAAACCCAACAACTGTG
GTCGTTGAGGAGAAGATAAGTGCAC
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