FC876896

Overview
NameFC876896
Unique NameFC876896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11603 contig Ccv1_Contig11603:31..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876896 vs. ExPASy Swiss-Prot
Match: 3HBH1_PSEAC (3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 69/254 (27.17%), Postives = 114/254 (44.88%), Query Frame = 1 
Query:   16 DVVIIGAWIAGLATALALMRLGIKPLVLEKSDGLRGTGAAINFAPNAWLALDALGVSHKLASIYDPV-KRLFVTNLITGATQETSLSGKSENGSGVRY--IHRKKLLKTLADDL-PDDTIHFSSKIAAINSETHDALSPVIIHLADGTIVKARVLIGCDGIHSTV-ARWLGLSEPLNAGRSAGLGLAVFPEGHGLNKEVR-----LFVDAGMRAGYVPLNDNEIYWFLVCNCSAERESKARNPELIQKEVLEKY 747
            +++I GA I GL+ AL L R G++ +VLEK+  L   GA I  APNA+ ALDALG+          V K L++  +         L+ +     G  Y  IHR      L +       +   +    ++ E        I+H  DG+ +   VL+G DG+ S V  + +G  +P  +G +     +V P    + +E+R      +   G    + PL   +++  ++ + S   E +A  P +   EV EK+
Sbjct:    4 NILIAGAGIGGLSAALGLARKGMRSIVLEKAPELGEIGAGIQLAPNAYHALDALGIGEVARQTGVHVDKLLWMDGMTDKEIASVPLANRFREFFGNPYAVIHRADFHGLLVEACHKTGLVEVRTNAEVVDYENFPDRVEAILH--DGSCINGAVLVGADGLWSNVRQKVIGDGDPRVSGHTT--YRSVIP-AEDMPEELRWNMSTAWAGEGCHMVHYPLKGGKVFNLVLTSNSGASEPEAGVP-VTTDEVFEKF 251
The following BLAST results are available for this feature:
BLAST of FC876896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
3HBH1_PSEAC2.152e-1127.173-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas a... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1CH12RM1 EHR Citrus clementina cDNA clone KN0AAN1CH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876896 ID=FC876896; Name=FC876896; organism=Citrus clementina; type=EST; length=806bp
GCACGAGGATAAAAAGATGTTGTAATAATTGGAGCATGGATAGCAGGATT
GGCAACGGCGTTGGCTCTCATGAGACTTGGAATTAAACCCTTGGTTTTAG
AAAAATCTGACGGGCTCCGAGGCACTGGTGCTGCGATAAATTTTGCCCCA
AACGCTTGGCTTGCTCTTGATGCTCTTGGTGTTTCTCACAAGCTTGCTTC
CATTTATGATCCTGTTAAGAGGTTGTTTGTAACAAATCTTATAACTGGAG
CAACTCAAGAGACGTCCTTATCTGGAAAATCTGAGAATGGATCTGGAGTC
AGATACATACATCGCAAAAAGTTACTAAAGACCTTGGCAGATGATTTGCC
AGATGACACAATCCATTTCTCTTCGAAGATTGCTGCAATTAATTCAGAAA
CACATGATGCTTTGTCCCCAGTTATCATTCATTTGGCTGATGGTACTATA
GTTAAAGCTAGGGTTTTGATTGGATGTGATGGGATACACTCAACGGTGGC
ACGGTGGCTGGGACTTTCGGAACCGTTAAATGCCGGCCGATCAGCCGGGC
TTGGCTTGGCTGTGTTTCCTGAAGGCCATGGGCTGAACAAAGAAGTAAGG
CTATTTGTCGATGCGGGCATGAGGGCTGGATATGTGCCTCTCAATGATAA
CGAGATCTATTGGTTCCTCGTTTGTAATTGTTCCGCTGAAAGGGAAAGCA
AGGCAAGAAATCCTGAGCTGATTCAAAAAGAAGTACTCGAGAAGTATGCC
AAGGTCTTACCCCCATTTTACTCGGACATTGTTCGGCGTTCTGATGCTTC
AACGTT
back to top