FC876898

Overview
NameFC876898
Unique NameFC876898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3342 contig Ccv1_Contig3342:444..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC876898 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = 3 
Query:    9 DAYRPPPAPTPFDANVRHPQTPPVVQEICSN---------KSDPSVQTTPVPVQDTLGGNSQETSSKCDDLKEPESKTVANVELESTKELEVELSKSVHHVVAVIEEEDVCPTCLEEYDAENPRIITKCEHHFHLACIFEWMERSDTCPVCNQEMIFD 455
            +A+R  P P P+DA+ R+ ++    +E  S+         +SD    +    V      N++ T S  D  +E  SK+   +    +K +  +      ++  + E+EDVCPTCLEEY +ENP+I+TKC HHFHL+CI+EWMERS+ CPVC + M F+
Sbjct:   75 EAFRSTPRPLPYDADPRYFRSLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSE----NMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFN 228
The following BLAST results are available for this feature:
BLAST of FC876898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH9.362e-2537.34E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3BE04RM1 EHR Citrus clementina cDNA clone KN0AAN3BE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876898 ID=FC876898; Name=FC876898; organism=Citrus clementina; type=EST; length=584bp
GCACGAGGGATGCTTATAGACCACCTCCTGCACCAACACCATTTGATGCG
AATGTAAGGCATCCTCAAACTCCACCAGTGGTTCAAGAAATTTGCAGCAA
TAAGAGTGATCCTTCAGTGCAAACAACTCCTGTTCCTGTGCAAGATACAC
TTGGTGGCAATTCTCAAGAAACTTCATCTAAGTGTGATGACCTAAAGGAA
CCAGAATCTAAAACAGTAGCCAATGTTGAACTTGAATCAACTAAGGAGCT
AGAAGTTGAGCTCTCAAAGTCTGTTCATCATGTTGTTGCAGTGATAGAGG
AGGAGGATGTTTGCCCAACATGTCTGGAAGAGTATGATGCAGAGAATCCG
AGAATTATCACAAAATGTGAGCATCATTTTCATCTTGCGTGCATTTTTGA
ATGGATGGAAAGAAGTGACACCTGTCCAGTTTGCAATCAGGAAATGATAT
TTGACCTTCCTGTGGATTATTAGCTGTCCAGTGATTTCTGCAGAGTTCAG
CTTCTTAGTTATTTGACGTTGGGTTTTGGAGTTCAAGTTTATAAATGCTT
GGAAGTTGTTCCTCTTTGTTTACCCTCTTTTGGT
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