FC876954

Overview
NameFC876954
Unique NameFC876954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10822 contig Ccv1_Contig10822:84..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.083e-33
Identity = 78/168 (46.43%), Postives = 114/168 (67.86%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKAAQ-----LPDDLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARGR-KPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTI 613
            L++V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENY++E +EKA+      L  +++W FIG+LQ   V  L+A VPNL M+++VD+ K+A ++N   + +G  + L+V+VQ+NTSG ESK G+ PS  + +V+H++  CPNLEF GLMTI
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTI 183          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.095e-33
Identity = 77/168 (45.83%), Postives = 114/168 (67.86%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKAAQ-----LPDDLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARGR-KPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTI 613
            L++V +RV QA     R  P  + R+VAVSKTKP  ++ + Y  G R FGENY++E +EKA+      L  +++W FIG+LQ   V  L+A VPNL ++++VD+ K+AG++N   + +G  + L+V+VQ+NTSG ESK G+ PS  + +V+H++  CPNLEF GLMTI
Sbjct:   17 LRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKLAGKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTI 183          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.188e-32
Identity = 76/168 (45.24%), Postives = 115/168 (68.45%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKAAQLP-----DDLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARG-RKPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTI 613
            L++V +RV Q+  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENY++E +EKA+         +++W FIG+LQ   V  L+A VPNL+M+++VD+ K+A ++N   + +G  +PL+V+VQ+NTSG +SK G+ PS  + +V+H+  SCP+LEF GLMTI
Sbjct:   17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTI 183          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.926e-31
Identity = 75/168 (44.64%), Postives = 112/168 (66.67%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKAAQLP-----DDLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARGR-KPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTI 613
            L++V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENY++E +EKA+         +++W FIG+LQ   V  L+A VPNL+M+++VD+ K+A ++N   + +G  + L+V+VQ+NTSG  SK G+ P+    LV+H++  CP+LEF GLMTI
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTI 183          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.359e-28
Identity = 80/190 (42.11%), Postives = 113/190 (59.47%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSRPPDR--IRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKAAQLPD--DLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRL----------NRMVEARGRKPLRVLVQVNTSG*ESKSGVEPSRGLELVKHV--SQSCPN-LEFCGLMTIEMPDYTSTPENFE 652
            L S  + +    E  S   DR  +++VAVSKTKP  +IR +Y+ GHR FGENYI+E V K+ +L +  +++W FIG++QSN+ K +L  V NL +V++V+N KI  +L          N        K L +++QVNTSG ESKSG +P   L+LVKH     +C N L F GLMTI  P+ T    +F+
Sbjct:   10 LISSYKNIKDRVEIISNKFDRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPDFK 198          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: Y112_PASMU (UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.151e-27
Identity = 72/166 (43.37%), Postives = 101/166 (60.84%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKA---AQLPDDLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARGRKPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTIEMP 622
            L  + Q +  A +++ RP   ++++AVSKTKPV  I Q Y+AG   FGENY++E VEK    AQ    LEW FIG LQSN+ K +     +   +Q++D  KIA RLN       +KPL VL+Q+N S  +SKSG++P+  L+L K + Q+ P+L   GLM I  P
Sbjct:    7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLNEQ-RPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQI-QNLPHLCLRGLMAIPAP 167          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.834e-26
Identity = 70/175 (40.00%), Postives = 102/175 (58.29%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKAAQLPD---DLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARGRKPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTIEMP-DYTSTPEN 646
            L  + Q++  A +  +R  + ++++AVSKTKP+S I   Y+AG   FGENY++E VEK         +LEW FIG LQSN+ + +     +   +Q++D  KIA RLN       + PL VL+Q+N S  ESKSG++P   L L KH+ ++ P+L   GLM I  P D  +  EN
Sbjct:    7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQ-RPTNKAPLNVLIQINISDEESKSGIQPEEMLTLAKHI-ENLPHLCLRGLMAIPAPTDNIAEQEN 176          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: Y394_PSEAE (UPF0001 protein PA0394 OS=Pseudomonas aeruginosa GN=PA0394 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.092e-25
Identity = 71/164 (43.29%), Postives = 95/164 (57.93%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKAAQLPD-DLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARGRKPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTIEMP 622
            +  V  R+ +AA+ + R P  + ++AVSKTKP + +R+ + AG R FGENY++E + K A+L D  L W FIG +QSN+ +P+     +   V SVD  KIA RL+    A G  PL V +QVN SG  SKSG  P     L + V Q  PNL   GLM I  P
Sbjct:    8 IAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADLPLNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQRPA-GLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQ-LPNLRLRGLMAIPEP 166          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: YPI1_VIBAL (UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.344e-25
Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 2
Query:  134 LQSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEK----AAQLPDD-LEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARGRKPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTI--EMPDYTSTPENFE 652
            ++ +  ++    ++  R P+ ++++AVSKTKPV  I + Y+AG   FGENY++E V K    A   PD+ +EW FIG +QSN+ + +     +   V ++D  KIA RLN    +   KPL+VL+QVNTSG  SKSGV  +   EL + +S+  PNL   GLM+I   + DY S    F+
Sbjct:    8 IEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQRPSE-LKPLQVLIQVNTSGEASKSGVTEAEVFELAELISR-LPNLTLRGLMSIPANVSDYESQLHEFQ 182          
BLAST of FC876954 vs. ExPASy Swiss-Prot
Match: YKC9_SCHPO (UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.980e-25
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 2
Query:  197 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYIEEKVEKAAQLPDDLEWDFIGNLQSNRVKPLLAGVPNLAMVQSVDN*KIAGRLNRMVEARGRKPLRVLVQVNTSG*ESKSGVEPSRGLELVKHVSQSCPNLEFCGLMTI 613
            + +VAVSK  PV  + + Y AG R FGENY++E ++K   +PDD++W FIG+LQS++ K  +A V NL  ++++D  K A  +N   EA  + PL V +QVNTSG E+K GV PS+ LEL K V Q    L   GLMTI
Sbjct:   24 VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKK-IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEENKGGVTPSKVLELCKQV-QDMKYLRLKGLMTI 159          
The following BLAST results are available for this feature:
BLAST of FC876954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PROSC_HUMAN4.083e-3346.43Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB9.095e-3345.83Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE1.188e-3245.24Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN2.926e-3144.64Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI1.359e-2842.11Proline synthetase co-transcribed bacterial homolo... [more]
Y112_PASMU1.151e-2743.37UPF0001 protein PM0112 OS=Pasteurella multocida GN... [more]
Y090_HAEIN4.834e-2640.00UPF0001 protein HI0090 OS=Haemophilus influenzae G... [more]
Y394_PSEAE4.092e-2543.29UPF0001 protein PA0394 OS=Pseudomonas aeruginosa G... [more]
YPI1_VIBAL5.344e-2539.44UPF0001 protein in pilT-proC intergenic region OS=... [more]
YKC9_SCHPO6.980e-2547.48UPF0001 protein C644.09 OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1DD08RM1 EHR Citrus clementina cDNA clone KN0AAN1DD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876954 ID=FC876954; Name=FC876954; organism=Citrus clementina; type=EST; length=657bp
GCGGCGCGCTCTAAAACATATGGGATCCCCCGGGCGTGCGGAATTCGGCA
CGAGGGAGAATCATATCAACGAACAAGTAGAAGCAGAAACCATGGCTGCG
TCTGCCGCCACAGATGGCGTTGCAGCGACGGCGCTTCAGTCCGTGATCCA
ACGGGTCCACCAAGCCGCCGAGAGATCCAGTCGCCCGCCGGACCGGATTC
GAATCGTCGCTGTCAGCAAAACCAAACCGGTCTCAGTAATCCGTCAGGTT
TATGAGGCCGGTCACCGATGTTTCGGTGAAAACTACATTGAAGAAAAAGT
GGAAAAGGCGGCTCAGCTTCCAGATGATCTAGAATGGGATTTCATTGGGA
ACCTGCAGAGCAATAGAGTGAAACCTTTATTGGCTGGTGTGCCTAACCTG
GCAATGGTACAAAGTGTGGACAACTAGAAGATTGCAGGTCGTCTTAATCG
TATGGTTGAAGCCAGGGGAAGGAAGCCGTTAAGAGTCTTGGTTCAAGTGA
ATACCAGTGGATAAGAATCTAAATCTGGAGTTGAGCCGTCGAGGGGTCTG
GAACTTGTGAAACATGTTAGTCAAAGCTGTCCAAATCTTGAGTTTTGTGG
CCTAATGACAATTGAGATGCCGGATTACACATCGACTCCGGAGAACTTCG
AGACATT
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