FC876956

Overview
NameFC876956
Unique NameFC876956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10381 contig Ccv1_Contig10381:1..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876956 vs. ExPASy Swiss-Prot
Match: TOC33_ARATH (Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 5.795e-56
Identity = 105/140 (75.00%), Postives = 127/140 (90.71%), Query Frame = 1
Query:  136 MGSLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRXII 555
            MGSL+ REW GFQQFP+ATQ KLIE   KLKQ+++N++T+LV+GKGGVGKSSTVNS+IGE+VV V+ FQ+E LRPVMVSR+ GGFT+NIIDTPGLVEAGYVN+QALELIKGFL+N+TIDVLLY DRLD YRVD+LD+ ++
Sbjct:    1 MGSLV-REWVGFQQFPAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVV 139          
BLAST of FC876956 vs. ExPASy Swiss-Prot
Match: TOC34_ARATH (Translocase of chloroplast 34, chloroplastic OS=Arabidopsis thaliana GN=TOC34 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 6.630e-52
Identity = 97/135 (71.85%), Postives = 116/135 (85.93%), Query Frame = 1
Query:  151 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRXII 555
            LREW G QQFP ATQ+KL+E+L K K+E+V++LT+LVMGKGGVGKSSTVNSVIGE+   V++FQSE LRP +VSR++ GFTLNIIDTPGL+E GYVN QA+ +IK FLLN TIDVLLY DRLD YRVDDLDR ++
Sbjct:    7 LREWIGIQQFPPATQSKLLEILGKYKEEDVSSLTVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLIEGGYVNDQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVV 141          
BLAST of FC876956 vs. ExPASy Swiss-Prot
Match: TOC34_PEA (Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.477e-51
Identity = 99/136 (72.79%), Postives = 116/136 (85.29%), Query Frame = 1
Query:  151 LREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRXIIK 558
            +REW+G   F  ATQ KL+ELL  LKQE+VN+LTILVMGKGGVGKSSTVNS+IGERVV+++ FQSE  RPVMVSRS+ GFTLNIIDTPGL+E GY+N  AL +IK FLL+KTIDVLLY DRLDAYRVD+LD+ + K
Sbjct:    8 VREWSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAK 143          
BLAST of FC876956 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  142 SLLLREWAGFQQFPSATQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEAGY---VNYQALELIKGFLLNKTIDVLLYADRLDAYRVD 534
            +LL    AG      A + K +E  ++  +E + +L ILV+GK GVGKS+T+NS++G ++ ++++F         +S +  G  +  IDTPGL  A      N + L  +K  +     D++LY DRLD    D
Sbjct:  821 ALLAGRQAGQLFSLDAAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSILGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMKKCPPDIVLYVDRLDTQTRD 954          
BLAST of FC876956 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.329e-11
Identity = 52/196 (26.53%), Postives = 94/196 (47.96%), Query Frame = 1
Query:   10 AENTNTVKSDHPGEVR------R*RLYSLSLDATRRRNNIYANSPKKSMG---SLLLREWAGFQQFPSATQNKLIELLSKLKQENVN-TLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA---GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRXIIK 558
            AE++ T ++D   E R      R +   LS    +  +N+        +G    L  R  +    F     + + E L    Q+ ++ + TI+V+GK GVGKS+T+NS+  E  ++ ++FQ    +   +     G  + +IDTPGL+ +    + N + L+ ++ F+     D++LY DRLD    D  D  +++
Sbjct:  368 AEDSTTAETDEHDETREKLQFIRVKFLRLSHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGSRVGAFSFDRASAMAEQLEAAAQDPLDFSCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIEGFVQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGDMPLLR 563          
BLAST of FC876956 vs. ExPASy Swiss-Prot
Match: GTPA_DICDI (GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.685e-11
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  190 TQNKLIELLSKLKQENVNTLTILVMGKGGVGKSSTVNSVIGERVVTVNSFQSEALRPVMVSRSKGGFTLNIIDTPGLVEA--GYVNYQALELIKGFLLNKTIDVLLYADRLDAYRVDDLDRXII 555
            T  +L E+L+ LK    N   +L++G+ GVGKSST+N+V G  +  V+S +S    P   SR   GF LNIIDTPG +++    V+   +  I+ +L  KTI  +L+ ++    R D   + +I
Sbjct:  134 TTEELQEMLAVLKGVQ-NECNVLLLGRTGVGKSSTLNTVFGIDI-PVHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLDSQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVI 255          
The following BLAST results are available for this feature:
BLAST of FC876956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TOC33_ARATH5.795e-5675.00Translocase of chloroplast 33, chloroplastic OS=Ar... [more]
TOC34_ARATH6.630e-5271.85Translocase of chloroplast 34, chloroplastic OS=Ar... [more]
TOC34_PEA1.477e-5172.79Translocase of chloroplast 34 OS=Pisum sativum GN=... [more]
TC159_ARATH7.923e-1332.84Translocase of chloroplast 159, chloroplastic OS=A... [more]
TC120_ARATH3.329e-1126.53Translocase of chloroplast 120, chloroplastic OS=A... [more]
GTPA_DICDI9.685e-1136.29GTP-binding protein A OS=Dictyostelium discoideum ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3CA01RM1 EHR Citrus clementina cDNA clone KN0AAN3CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876956 ID=FC876956; Name=FC876956; organism=Citrus clementina; type=EST; length=575bp
TTTTGCTGGGCGGAAAATACAAACACTGTAAAGTCCGACCACCCAGGCGA
GGTAAGAAGATAACGGCTTTACTCCCTCAGTTTGGACGCAACTAGAAGAA
GAAACAACATTTACGCAAACAGCCCGAAGAAATCAATGGGGTCTCTTCTA
CTTCGTGAATGGGCGGGGTTTCAACAGTTTCCTTCTGCAACTCAGAACAA
ATTGATCGAATTACTGTCCAAATTGAAGCAAGAGAATGTAAACACGTTGA
CAATTCTTGTCATGGGCAAAGGTGGTGTTGGAAAATCTTCAACTGTGAAT
TCTGTTATCGGTGAACGAGTAGTCACTGTTAATTCTTTCCAGTCCGAAGC
GCTGAGACCAGTAATGGTTTCTCGTTCCAAAGGAGGTTTCACATTGAACA
TCATTGATACTCCAGGCCTTGTAGAGGCTGGTTATGTTAATTACCAAGCT
CTTGAGTTGATTAAAGGGTTTCTTTTGAATAAGACCATAGATGTTCTGCT
ATATGCTGACCGTTTGGATGCATATAGAGTAGATGACTTGGATAGACNAA
TTATTAAGGGCTGTCCCCGGAACTT
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