FC876960

Overview
NameFC876960
Unique NameFC876960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10417 contig Ccv1_Contig10417:6..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 3.631e-102
Identity = 178/216 (82.41%), Postives = 189/216 (87.50%), Query Frame = 2
Query:   65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAE 706
            MPPK+   SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K                LNDLFK+AVSQPKVPVGVDPKSI+CEF+K GQCQKGFKCKFSHDLNVQRKGEKIDIY+DKRD ETMEDWDQETLEKVV SK  EYQQNKPTDIVCKYFL+AVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE+E
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQETLEKVVASKGAEYQQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEESE 216          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 7.571e-100
Identity = 172/214 (80.37%), Postives = 188/214 (87.85%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRDKE-TMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEA 703
            MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K                LN+LFK+A+SQPKVPVGVDPKSILCEF+KAGQCQKGFKCKFSHDLN+QRKGEKIDIYSD RD++  M++WDQETLEKVVESK  EY QNKPTDIVCKYFL+AVEKKQYGWFW CPNGGK+CHYRHALPPGYVLKSQMKALLEEE+
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLNIQRKGEKIDIYSDTRDEDGDMDEWDQETLEKVVESKKNEYNQNKPTDIVCKYFLDAVEKKQYGWFWSCPNGGKECHYRHALPPGYVLKSQMKALLEEES 214          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.680e-55
Identity = 112/229 (48.91%), Postives = 148/229 (64.63%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE 700
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVC++FLEA+E  +YGWFWVCP GG +C YRHALPPG+VLK   K   +E+
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKED 228          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 5.680e-55
Identity = 112/229 (48.91%), Postives = 148/229 (64.63%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE 700
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVC++FLEA+E  +YGWFWVCP GG +C YRHALPPG+VLK   K   +E+
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCRHFLEAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKKKEEKED 228          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.419e-55
Identity = 113/229 (49.34%), Postives = 147/229 (64.19%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE 700
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCK+FLEA+E  +YGWFWVCP GG  C YRHALPPG+VLK   K   +E+
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKED 228          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.419e-55
Identity = 113/229 (49.34%), Postives = 147/229 (64.19%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE 700
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL ++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCK+FLEA+E  +YGWFWVCP GG  C YRHALPPG+VLK   K   +E+
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKCEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKHFLEAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKED 228          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.265e-54
Identity = 112/221 (50.68%), Postives = 143/221 (64.71%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEE 700
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V+  KV  G DPKS++C FYK GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TME+WD++ LE+VV  K+ E ++ KP T IVCK+FLEA+E  +YGWFWVCP GG  C YRHALPPG+VLK   K   ++E
Sbjct:   10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDEELEKDTMENWDEKKLEEVVNKKHGEAEKIKPKTQIVCKFFLEAIENNKYGWFWVCPGGGDMCMYRHALPPGFVLKKDKKKEEKDE 229          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_CHICK (Zinc finger CCCH domain-containing protein 15 OS=Gallus gallus GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.202e-54
Identity = 110/223 (49.33%), Postives = 144/223 (64.57%), Query Frame = 2
Query:   65 MPPKQQS-------KAELAKKQKIVEDKTFGLKNKNKSKNVQ--KYVQNLKQNVQPKPDQS---KVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNKP-TDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMK 682
            MPPK+Q        KA+  KK+KI+EDKTFGLKNK  +K  +  K V +L +  Q  P Q+   +                LN+LFK  V+  K+  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TM++WD++ LE+VV  K+ E ++ KP T IVCKYFL+A+E  +YGWFWVCP GG +C YRHALPPG+VLK   K
Sbjct:    1 MPPKKQQQPAGSSKKADQKKKEKIIEDKTFGLKNKKGAKQQKFFKAVTHLVKFGQQYPRQAAQTESEKKLKKEDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYIDARDEDLEKDTMDNWDEKKLEEVVNKKHGEAEKKKPKTQIVCKYFLDAIENNKYGWFWVCPGGGDNCMYRHALPPGFVLKKDKK 223          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_DICDI (Zinc finger CCCH domain-containing protein 15 homolog OS=Dictyostelium discoideum GN=DDB_G0292410 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.117e-53
Identity = 112/223 (50.22%), Postives = 142/223 (63.68%), Query Frame = 2
Query:   65 MPPKQ-QSKAELAK-KQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV-----QPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAG-QCQKGFKCKFSHDLNVQRKGEKIDIYSDKR-DKETMEDWDQETLEKVVESKNKEYQQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEAE 706
            MPPKQ QSK  + K K+K VEDKTFGLKNKNKSK V  YV  ++  V     Q K    K                   +    + Q KVP+GVDPKSI+CE++K G  C KG +CKF+HDL   RK EKIDIY+D+R D++TME+WD+  L+ VVE K     + KPT I+CK+FL+A+E K+YGWFW CPNGG+ C Y+H LP GY LK + K+  E+E E
Sbjct:    1 MPPKQAQSKKTVEKEKKKKVEDKTFGLKNKNKSKKVAAYVSQVEAQVKHSGLQNKEAALKEKAKRDKELAEKAKKEAESILVNTIVQSKVPLGVDPKSIVCEYFKQGVTCPKGNRCKFAHDLAAGRKSEKIDIYTDRRKDEDTMENWDEAKLKSVVEKKRTTENKAKPTAIICKFFLDAIESKKYGWFWECPNGGEKCAYQHCLPEGYQLKKK-KSREEDEVE 222          
BLAST of FC876960 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.071e-53
Identity = 108/213 (50.70%), Postives = 138/213 (64.79%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCQKGFKCKFSHDLNVQRKGEKIDIYSDKRD----KETMEDWDQETLEKVVESKNKEYQQNK-PTDIVCKYFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQ 676
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V   KV  G DPKS++C F+K GQC KG KCKFSHDL+++RK EK  +Y D RD    K+TME+WD++ LE+VV  K+ E ++ K  T IVCK+FLEA+E  +YGWFWVCP GG  C YRHALPPG+VLK +
Sbjct:   10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDKCKFSHDLSLERKCEKRSVYVDGRDDELEKDTMENWDEKKLEEVVNKKHGEAEKIKAKTQIVCKFFLEAIENNKYGWFWVCPGGGDTCMYRHALPPGFVLKKE 221          
The following BLAST results are available for this feature:
BLAST of FC876960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
C3H11_ORYSJ3.631e-10282.41Zinc finger CCCH domain-containing protein 11 OS=O... [more]
C3H21_ARATH7.571e-10080.37Zinc finger CCCH domain-containing protein 21 OS=A... [more]
ZC3HF_RAT5.680e-5548.91Zinc finger CCCH domain-containing protein 15 OS=R... [more]
ZC3HF_MOUSE5.680e-5548.91Zinc finger CCCH domain-containing protein 15 OS=M... [more]
ZC3HF_HUMAN7.419e-5549.34Zinc finger CCCH domain-containing protein 15 OS=H... [more]
ZC3HF_BOVIN7.419e-5549.34Zinc finger CCCH domain-containing protein 15 OS=B... [more]
ZC3HF_XENTR1.265e-5450.68Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_CHICK8.202e-5449.33Zinc finger CCCH domain-containing protein 15 OS=G... [more]
ZC3HF_DICDI3.117e-5350.22Zinc finger CCCH domain-containing protein 15 homo... [more]
ZC3HF_XENLA4.071e-5350.70Zinc finger CCCH domain-containing protein 15 OS=X... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CA06RM1 EHR Citrus clementina cDNA clone KN0AAN3CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876960 ID=FC876960; Name=FC876960; organism=Citrus clementina; type=EST; length=708bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAAGTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAGTTCTCACAT
GATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGACAA
GCGCGACAAAGAAACAATGGAGGATTGGGATCAGGAAACTTTGGAGAAGG
TTGTGGAATCAAAGAATAAGGAATACCAGCAGAACAAACCTACAGATATT
GTTTGTAAATACTTTTTAGAAGCTGTGGAGAAGAAACAGTATGGCTGGTT
TTGGGTCTGCCCAAATGGTGGTAAAGATTGCCATTACAGGCATGCTCTTC
CTCCTGGATATGTTTTAAAATCTCAGATGAAGGCTCTGTTGGAGGAAGAA
GCAGAGAA
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