FC877095

Overview
NameFC877095
Unique NameFC877095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877095 vs. ExPASy Swiss-Prot
Match: YCIO_SHIFL (Uncharacterized protein yciO OS=Shigella flexneri GN=yciO PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.608e-22
Identity = 54/171 (31.58%), Postives = 93/171 (54.39%), Query Frame = 1
Query:   49 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 558
            P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +      +++CR L ++ TY+            N+ FR +K+  PG YTFIL  +KEVP++ ++          RK +G+R+P++ I QA+L+ +  P++STS+          DP  I D
Sbjct:    9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKD 162          

HSP 2 Score: 33.4982 bits (75), Expect = 6.608e-22
Identity = 12/33 (36.36%), Postives = 22/33 (66.67%), Query Frame = 2
Query:  575 LDFVVDGGVRMAEPSTVVDMTGTYPKIIRQGKG 673
            +D ++ GG    +P+TV+D+T   P ++R+G G
Sbjct:  168 VDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200          
BLAST of FC877095 vs. ExPASy Swiss-Prot
Match: YCIO_ECOLI (Uncharacterized protein yciO OS=Escherichia coli (strain K12) GN=yciO PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.608e-22
Identity = 54/171 (31.58%), Postives = 93/171 (54.39%), Query Frame = 1
Query:   49 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 558
            P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +      +++CR L ++ TY+            N+ FR +K+  PG YTFIL  +KEVP++ ++          RK +G+R+P++ I QA+L+ +  P++STS+          DP  I D
Sbjct:    9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKD 162          

HSP 2 Score: 33.4982 bits (75), Expect = 6.608e-22
Identity = 12/33 (36.36%), Postives = 22/33 (66.67%), Query Frame = 2
Query:  575 LDFVVDGGVRMAEPSTVVDMTGTYPKIIRQGKG 673
            +D ++ GG    +P+TV+D+T   P ++R+G G
Sbjct:  168 VDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200          
BLAST of FC877095 vs. ExPASy Swiss-Prot
Match: YCIO_ECOL6 (Uncharacterized protein yciO OS=Escherichia coli O6 GN=yciO PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.608e-22
Identity = 54/171 (31.58%), Postives = 93/171 (54.39%), Query Frame = 1
Query:   49 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANI-FRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSVKWLKDNEWMVDPVVIAD 558
            P       +   VE++++G V V PTD+ YA+ C ++  +A+ER+ RI+ +      +++CR L ++ TY+            N+ FR +K+  PG YTFIL  +KEVP++ ++          RK +G+R+P++ I QA+L+ +  P++STS+          DP  I D
Sbjct:    9 PDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF---------VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKD 162          

HSP 2 Score: 33.4982 bits (75), Expect = 6.608e-22
Identity = 12/33 (36.36%), Postives = 22/33 (66.67%), Query Frame = 2
Query:  575 LDFVVDGGVRMAEPSTVVDMTGTYPKIIRQGKG 673
            +D ++ GG    +P+TV+D+T   P ++R+G G
Sbjct:  168 VDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVG 200          
BLAST of FC877095 vs. ExPASy Swiss-Prot
Match: Y1198_HAEIN (Uncharacterized protein HI1198 OS=Haemophilus influenzae GN=HI1198 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.153e-19
Identity = 45/153 (29.41%), Postives = 83/153 (54.25%), Query Frame = 1
Query:   49 PSGADSWKLEPVVELLKEGAVGVVPTDTLYAIVCDLKSHSAIERLRRIKNVEPSKPLSILCRSLRDIDTYTTGFPRGDGQGHANIFRAVKHCLPGPYTFILTASKEVPKKCVRYGTTTAKYSLRKHVGVRIPNDAICQAILQKMDAPLISTSV 507
            P    +  +   VE+L++G V V PTD+ YA+ C +    A++R+  I+ +      +++C  L ++ TY         + +   +R +K+  PG YTFILTA+KE+P++ +         S RK +G+R+P++ I   +L  +  P++S S+
Sbjct:    9 PENPQARLINQAVEILQKGGVIVYPTDSGYALGCMMGDKHAMDRIVAIRKLPEGHNFTLVCSDLSELSTY--------ARVNNTAYRLIKNNTPGRYTFILTATKELPRRLMT--------SKRKTIGLRVPDNKIALDLLSALGEPILSCSL 145          

HSP 2 Score: 35.8094 bits (81), Expect = 2.153e-19
Identity = 15/33 (45.45%), Postives = 22/33 (66.67%), Query Frame = 2
Query:  575 LDFVVDGGVRMAEPSTVVDMTGTYPKIIRQGKG 673
            +D ++ GG    EP+TVVD+T   P I+R+G G
Sbjct:  169 VDLIIHGGYLGQEPTTVVDLTEESPVILREGSG 201          
The following BLAST results are available for this feature:
BLAST of FC877095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YCIO_SHIFL6.608e-2231.58Uncharacterized protein yciO OS=Shigella flexneri ... [more]
YCIO_ECOLI6.608e-2231.58Uncharacterized protein yciO OS=Escherichia coli (... [more]
YCIO_ECOL66.608e-2231.58Uncharacterized protein yciO OS=Escherichia coli O... [more]
Y1198_HAEIN2.153e-1929.41Uncharacterized protein HI1198 OS=Haemophilus infl... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3DA12RM1 EHR Citrus clementina cDNA clone KN0AAN3DA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877095 ID=FC877095; Name=FC877095; organism=Citrus clementina; type=EST; length=763bp
GCACGAGGCTTCACCAAGGAAGGCGGGTTGATGTATGTTGAAGCTGACCC
ATCGGGAGCTGACAGTTGGAAATTGGAGCCAGTTGTTGAACTTTTGAAAG
AAGGAGCTGTGGGGGTCGTTCCTACTGACACTCTGTATGCAATAGTTTGT
GATTTGAAGAGCCATTCAGCGATTGAACGTCTTCGTAGGATAAAAAATGT
AGAACCTTCTAAGCCTTTAAGTATCTTATGCCGGTCTCTCCGTGATATAG
ACACTTATACAACTGGTTTCCCTCGTGGTGATGGCCAAGGACATGCAAAT
ATCTTTCGAGCTGTTAAGCATTGCTTACCTGGGCCTTATACCTTTATTTT
AACTGCCAGCAAAGAAGTGCCTAAAAAGTGTGTAAGATATGGGACTACGA
CAGCCAAATATTCTTTGAGAAAACATGTGGGTGTCCGTATCCCTAATGAT
GCCATATGCCAAGCAATACTACAAAAGATGGATGCTCCATTAATCTCCAC
AAGTGTGAAGTGGCTAAAGGATAATGAATGGATGGTAGATCCAGTTGTGA
TAGCTGATACATGGACCAGAGGGCCTTGATTTTGTTGTTGATGGTGGTGT
AAGAATGGCTGAACCTTCCACTGTAGTTGACATGACTGGGACTTATCCAA
AAATCATACGGCAAGGAAAGGGACCTAAACTATACTGGATGGAAGAGGAA
GATGCTAATTCAACAGCAATTGAAGATCTAATCCCTTCCGCTACCTAAAA
ATACCATGCATCT
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