FC877097

Overview
NameFC877097
Unique NameFC877097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877097 vs. ExPASy Swiss-Prot
Match: TPK1_HUMAN (Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.361e-17
Identity = 54/157 (34.39%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLR---ILVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIG 455
            GGANR+YD              R  + P+ I GD DSIR EV ++YA+ G +++  + DQD TD  KC+  ++     +E+ +L+   I+  G L GRFD    ++N L++ + I    II++ ++  I LL +  +H +++ + +EG  CGLIP+G
Sbjct:   47 GGANRLYDIT---------EGERESFLPEFINGDFDSIRPEVREYYATKGCELI-STPDQDHTDFTKCLKMLQ---KKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLL-QPGKHRLHVDTGMEGDWCGLIPVG 189          
BLAST of FC877097 vs. ExPASy Swiss-Prot
Match: TPK1_MOUSE (Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.822e-17
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYR---FSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIG 455
            GGAN +YD    L   E     R  + P+ + GD DSIR EV ++Y   G  ++  + DQD TD  KC+  ++      E     I+  G LGGRFD    ++N L++    + + II++  D  I LL +  +H +++ + +EG  CGLIP+G
Sbjct:   47 GGANHLYD----LTEGE-----RESFLPEFVSGDFDSIRPEVKEYYTKKGCDLI-STPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLL-QPGKHRLHVDTGMEGSWCGLIPVG 189          
BLAST of FC877097 vs. ExPASy Swiss-Prot
Match: TPK1_BOVIN (Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.468e-16
Identity = 50/157 (31.85%), Postives = 86/157 (54.78%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLR---ILVAGALGGRFDHEAGNINVLY---RFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIG 455
            GGAN +YD              R  + P+ I GD DSIR EV + YA  G +++  + DQD TD  KC+  ++     +E+ +L+   I+  G L GRFD    +++ L+   + + + +I++ ++  I LL +  +H +++ + +EG  CGLIP+G
Sbjct:   47 GGANHLYDVT---------EGERESFLPEFISGDFDSIRPEVREHYAIKGCEII-STPDQDHTDFTKCLEVLQ---KKIEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQAPQITSLPVIIIQEESLIYLL-QPGKHKLHVDTGMEGDWCGLIPVG 189          
The following BLAST results are available for this feature:
BLAST of FC877097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TPK1_HUMAN1.361e-1734.39Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK... [more]
TPK1_MOUSE8.822e-1734.42Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk... [more]
TPK1_BOVIN7.468e-1631.85Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2AD02RM1 EHR Citrus clementina cDNA clone KN0AAN2AD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877097 ID=FC877097; Name=FC877097; organism=Citrus clementina; type=EST; length=458bp
ATGGAGGCGCTAACCGTGTCTATGATGAATTGCCTCAACTTTTTCCTCAT
GAAGATCCTTCTGATATTCGCCGCAGGTACAAGCCAGACCTCATTAAAGG
AGACATGGATTCAATCCGAAAAGAAGTAATGGATTTTTATGCAAGTTTGG
GAACCAAAGTGGTAGATGAATCGCATGATCAGGACACCACGGACCTACAT
AAATGTGTAGCATATATTCGCGACTGCACACCAAACTTAGAGAAGTCTAA
TCTCCGCATTCTTGTTGCTGGGGCACTTGGTGGACGGTTTGACCATGAGG
CTGGAAACATAAATGTTTTATATCGCTTCTCAGACATACGGATAATACTT
TTATCTGATGATTGCCATATCCAACTTCTCCCGAAAACTCACCGCCACGA
TATCTACATACAATCTTCTGTAGAGGGTCCACATTGTGGACTCATCCCTA
TTGGGATG
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