FC877207

Overview
NameFC877207
Unique NameFC877207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877207 vs. ExPASy Swiss-Prot
Match: Y3893_DICDI (Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium discoideum GN=DDB_G0283893 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.586e-36
Identity = 89/252 (35.32%), Postives = 140/252 (55.56%), Query Frame = 2
Query:   11 LEGVSGEN-EIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRV----------------------NLGGGTSGSARGECVY---TTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVPIAQYVRYVDQYWDNLNALGRADGNRLRLLTYDI 688
            LE  +G + +IG+ AENLL++++    +G+    + VS  R  ++ E    A + RE +L+ LG+ Q+     G+ I+    +               CMVCREGYS +PTD+LG+Y++SKR+                      +L   +SG   G  +Y   TTV++FN IHF CH++A +AD ++K PK+EWEGA LRN ++ CN LFPV  P +    +  Y D++W NLN + R +G + R+L++D+
Sbjct: 5392 LEETAGTSAKIGSLAENLLESIA----EGNEKTSKIVSDTRKESKMEKLSHAQKHREDVLKQLGLAQQ-----GKHIMAN--VVPGSIEDLDDDEGFTCMVCREGYSFKPTDVLGIYTFSKRIPLTSVGETTCPPSSTTNVAASLSLSPSSSGGGGGGALYYGFTTVTHFNFIHFNCHRDATKADRSMKVPKEEWEGAALRNQQTKCNGLFPVLPPKMNSDAFTPYSDKFWVNLNNISRVEGPKFRILSHDL 5632          
BLAST of FC877207 vs. ExPASy Swiss-Prot
Match: POE_DROPS (Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura GN=poe PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.572e-25
Identity = 72/192 (37.50%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   11 LEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSV 586
            LE VS +  +G+ AENLL+ LS      D     +V  +R  TR E +RLA+  RE+ L  LGMR    ++ G+  V A+                 C +CREGY+ +P  +LG+Y+++KR N+      S R    YTTV++FN++H  CH  A R    L   + EWE A+L+N  + CN L P+ GPSV
Sbjct: 4938 LEQVSSDEHVGSLAENLLEALST-----DAATAARVQQVRDFTRAEKKRLAMATREKQLDALGMR---TNEKGQ--VTAKGSILQKIEKLRDETGLTCFICREGYACQPEKVLGIYTFTKRCNVEEFELKS-RKTIGYTTVTHFNVVHVDCHTSAIR----LTRGRDEWERASLQNANTRCNGLLPLWGPSV 5114          
BLAST of FC877207 vs. ExPASy Swiss-Prot
Match: UBR4_RAT (E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegicus GN=Ubr4 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 71/193 (36.79%), Postives = 101/193 (52.33%), Query Frame = 2
Query:   11 LEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVP 589
            LE VS +  IG  AENLL+ L          + +K+   R  TR E +R+A+  R++ L  LGM     ++ G+  VV +                 C +CREGY  +PT +LG+Y+++KRV L        R +  Y+TVS+FNI+H+ CH  A R    L   ++EWE A L+N  + CN L PV GP VP
Sbjct: 4762 LEQVSSDEGIGTLAENLLEALREHPD-----VNKKIDAARRETRAEKKRMAMAMRQKALGTLGMT---TNEKGQ--VVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVAL-EEMENKPRKQQGYSTVSHFNIVHYDCHLAAVR----LARGREEWESAALQNANTKCNGLLPVWGPHVP 4939          
BLAST of FC877207 vs. ExPASy Swiss-Prot
Match: UBR4_MOUSE (E3 ubiquitin-protein ligase UBR4 OS=Mus musculus GN=Ubr4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 71/193 (36.79%), Postives = 101/193 (52.33%), Query Frame = 2
Query:   11 LEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVP 589
            LE VS +  IG  AENLL+ L          + +K+   R  TR E +R+A+  R++ L  LGM     ++ G+  VV +                 C +CREGY  +PT +LG+Y+++KRV L        R +  Y+TVS+FNI+H+ CH  A R    L   ++EWE A L+N  + CN L PV GP VP
Sbjct: 4748 LEQVSSDEGIGTLAENLLEALREHPD-----VNKKIDAARRETRAEKKRMAMAMRQKALGTLGMT---TNEKGQ--VVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVAL-EEMENKPRKQQGYSTVSHFNIVHYDCHLAAVR----LARGREEWESAALQNANTKCNGLLPVWGPHVP 4925          
BLAST of FC877207 vs. ExPASy Swiss-Prot
Match: UBR4_HUMAN (E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens GN=UBR4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25
Identity = 71/193 (36.79%), Postives = 101/193 (52.33%), Query Frame = 2
Query:   11 LEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVP 589
            LE VS +  IG  AENLL+ L          + +K+   R  TR E +R+A+  R++ L  LGM     ++ G+  VV +                 C +CREGY  +PT +LG+Y+++KRV L        R +  Y+TVS+FNI+H+ CH  A R    L   ++EWE A L+N  + CN L PV GP VP
Sbjct: 4751 LEQVSSDEGIGTLAENLLEALREHPD-----VNKKIDAARRETRAEKKRMAMAMRQKALGTLGMT---TNEKGQ--VVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVAL-EEMENKPRKQQGYSTVSHFNIVHYDCHLAAVR----LARGREEWESAALQNANTKCNGLLPVWGPHVP 4928          
BLAST of FC877207 vs. ExPASy Swiss-Prot
Match: POE_DROME (Protein purity of essence OS=Drosophila melanogaster GN=poe PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 72/197 (36.55%), Postives = 105/197 (53.30%), Query Frame = 2
Query:   11 LEGVSGENEIGARAENLLDTLSNKEGKGDGFLEEKVSMLRHATRDEMRRLALRKREQLLQGLGMRQELASDGGERIVVAQPIXXXXXXXXXXXXXXACMVCREGYSLRPTDLLGVYSYSKRVNLGGGTSGSARGECVYTTVSYFNIIHFQCHQEAKRADAALKNPKKEWEGATLRNNESLCNSLFPVRGPSVPIAQY 601
            LE VS +  +G+ AENLL+ LS      D     +V  +R  TR E +RLA+  RE+ L  LGMR    ++ G+  V A+                 C +CREGY+ +P  +LG+Y+++KR N+      S R    YTTV++FN++H  CH  A R    L   + EWE A+L+N  + CN L P+ GP+V  A +
Sbjct: 4879 LEQVSSDEHVGSLAENLLEALST-----DSATAARVQQVRDFTRAEKKRLAMATREKQLDALGMR---TNEKGQ--VTAKGSILQKIEKLRDETGLTCFICREGYACQPDKVLGIYTFTKRCNVEEFELKS-RKTIGYTTVTHFNVVHVDCHTSAIR----LTRGRDEWERASLQNANTRCNGLLPLWGPAVGEAAF 5060          
The following BLAST results are available for this feature:
BLAST of FC877207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y3893_DICDI2.586e-3635.32Probable E3 ubiquitin-protein ligase DDB_G0283893 ... [more]
POE_DROPS1.572e-2537.50Protein purity of essence OS=Drosophila pseudoobsc... [more]
UBR4_RAT2.054e-2536.79E3 ubiquitin-protein ligase UBR4 OS=Rattus norvegi... [more]
UBR4_MOUSE2.054e-2536.79E3 ubiquitin-protein ligase UBR4 OS=Mus musculus G... [more]
UBR4_HUMAN2.054e-2536.79E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens G... [more]
POE_DROME2.682e-2536.55Protein purity of essence OS=Drosophila melanogast... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3DG11RM1 EHR Citrus clementina cDNA clone KN0AAN3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877207 ID=FC877207; Name=FC877207; organism=Citrus clementina; type=EST; length=697bp
GCACGAGGCTCTGGAAGGAGTATCGGGAGAGAATGAAATTGGTGCTCGGG
CTGAAAACTTGTTAGACACACTATCCAATAAAGAGGGAAAAGGAGATGGA
TTTTTGGAGGAAAAGGTGAGTATGTTGCGACATGCCACTAGGGATGAAAT
GAGGCGTCTTGCTTTAAGGAAGAGAGAGCAGTTACTTCAGGGACTTGGAA
TGAGACAAGAACTAGCTTCAGATGGTGGCGAGCGAATTGTGGTTGCTCAG
CCAATTTTGGAAGGTTTAGAAGATGTAGAGGAGGAGGAGGATGGATTGGC
ATGTATGGTGTGCCGAGAGGGCTACAGTTTGAGGCCTACTGATTTGCTTG
GTGTTTACTCTTACAGCAAGCGAGTGAACTTGGGTGGTGGTACTTCAGGA
AGTGCTCGTGGAGAATGTGTATACACTACTGTCAGTTATTTCAATATCAT
TCACTTCCAGTGTCACCAGGAAGCCAAAAGAGCAGATGCTGCTCTGAAGA
ATCCAAAGAAAGAATGGGAGGGAGCTACCCTCCGGAACAATGAATCTCTT
TGCAATTCCTTATTTCCTGTGAGAGGTCCATCTGTTCCAATAGCACAGTA
TGTCCGCTATGTTGATCAGTACTGGGATAACCTCAATGCTCTCGGCCGTG
CTGATGGGAACCGGCTCCGGCTGTTGACTTATGACATTGTTCTGATG
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