FC877216

Overview
NameFC877216
Unique NameFC877216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length795
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC877216 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 5.608e-36
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 2 
Query:  479 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKISA 724
            L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+KISA
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISA 243

HSP 2 Score: 33.113 bits (74), Expect = 5.608e-36
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 3 
Query:  726 LEGAESTVNKASGMGASTVKLLA 794
            LEGAEST+  ASGM ASTV LLA
Sbjct:  244 LEGAESTLVMASGMCASTVMLLA 266

HSP 3 Score: 70.8626 bits (172), Expect = 9.406e-12
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 2 
Query:  137 DPDFSGS--ARFDKPRISAARVIGASTASFSGLSSLIFRFPPNFVRQLSTKARRNCSNIGVAQI 322
            DPD  GS      + R+ A+  I +S    +GLSS I RFPPNFVRQLS KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88
The following BLAST results are available for this feature:
BLAST of FC877216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH5.608e-3686.59Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2BA03RM1 EHR Citrus clementina cDNA clone KN0AAN2BA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877216 ID=FC877216; Name=FC877216; organism=Citrus clementina; type=EST; length=795bp
GCACGAGGTTCTTATCATAGAATACAGAGAGAGCAAAGCCGCCGTTCAAT
ACGACGTCGTAATGGCCGTGTCCTCATGTTCGAGTCAAAAAATTTTGTCC
TTCTCTTCTTCATGTTCGTCTTTTGAGTGCCGTTCCGATCCCGACTTCTC
GGGCTCGGCTCGGTTTGATAAACCGAGGATCTCGGCGGCGCGAGTCATCG
GAGCGTCGACGGCGTCGTTTAGCGGCCTGTCGTCTCTGATTTTCAGGTTT
CCGCCGAACTTCGTGCGCCAGCTTAGCACGAAGGCCAGGAGGAACTGCAG
CAACATCGGCGTGGCGCAAATCGTGGCGGCTTCGTGGTCGAACGGTGTGG
GTTCCGGCTCTAACTCGGCGGCGGCTGCAGCAGCTTCCGCTGCCCCCGCC
CCGCCCGTCCCCGTCGAGATTACGAGCGGCGATGACATCGCGCTTGTTGA
CGGATTGAAAAATGTACATCTGGAGGCCCTCGCTGATTTGAAAAACGAGG
CTTCGTTTTTGAGCTCCGATGGGAGCCTTGCAATTCATGCCGGTGAAAGA
TTAGGTCGTGGTATAGTAACAGATGCAATTACTACCCCAGTGGTGAATAC
TTCTGCTTACTTCTTTAAGAAAACTGCTGAGCTTATTGATTTCAAGGAGA
AACGTCGTGCAAGTTTTGAATATGGGAGGTATGGAAACCCCACAACTGTG
GTCGTTGAGGAGAAGATAAGTGCACCTTGAGGGGGCTGAATCAACTGTGA
ATAAGGCATCTGGAATGGGTGCCAGCACAGTCAAGTTGTTGGCAT
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