FC877275 | Citrus Genome Database

Overview


Name	FC877275
Unique Name	FC877275
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	467

Libraries


Library Name	Type
EHR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

[Close]

BLAST of FC877275 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.030e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 1

Query:   25 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 177
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 58.9214 bits (141), Expect = 6.365e-11
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3

Query:  207 QNINLKVESSDTIDNVKAKIQDKKGTPPDQQRQIF 311
            + I L+VESSDTIDNVKAKIQDK+G PPDQQR IF
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45

HSP 3 Score: 27.335 bits (59), Expect = 6.365e-11
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 1

Query:  178 MQIFVKTLTGKT 213
            MQIFVKTLTGKT
Sbjct:    1 MQIFVKTLTGKT 12

The following BLAST results are available for this feature:

BLAST of FC877275 vs. ExPASy Swiss-Prot

BLAST of FC877275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
UBIQ_WHEAT	2.030e-11	69.23	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_TRYCR	2.030e-11	69.23	Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1	[more]
UBIQ_SOYBN	2.030e-11	69.23	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	2.030e-11	69.23	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	2.030e-11	69.23	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	2.030e-11	69.23	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	2.030e-11	69.23	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	2.030e-11	69.23	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	2.030e-11	69.23	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	2.030e-11	69.23	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAN2BF11RM1 EHR Citrus clementina cDNA clone KN0AAN2BF11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC877275 ID=FC877275; Name=FC877275; organism=Citrus clementina; type=EST; length=467bp
TTTTTCTTCCATGAAAGGCCTCCTAATCTCTCTGTCAAGATCGAGGACAA
GGAAGAGATCCTACGAGACCAGCAGAGGTTCATCTTTGCTGGCAAACGAC
TCGAGGATGGTCGCACACTTGTAGACTACAACATCCACGGGTCAACCCTT
CATTCGGTCCGCCGTTTCAGGGGTGGCATGCAGATATTTGTGAAAACCCT
GACCGGCAAAACATAAATTTGAAGGTCGAAAGCTCTGACACAATCGACAA
TGTCAAGGCTAAGATCCAGGACAAGAAGGGAACTCCACCGGACCAGCAGA
GGCAGATCTTTTGGTTTGTGTTTGGTTGGGGTAGTTTGTGGATGCCTCTC
CTGAGGTTTGACCTTTGANAATGTATCTGGACGTGTATAAGCGTAAAAAA
TGTATCTGGACGTGTATAAGCGTAGAAAATGTATCTGGACGTGTATAATC
CGTGAAAATGTATCTGG