FC877280
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_MAIZE (Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays GN=BX1 PE=1 SV=2) HSP 1 Score: 319.701 bits (818), Expect = 1.186e-86 Identity = 152/252 (60.32%), Postives = 198/252 (78.57%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSALP 761 +GK A IPYITAGDPDL+TTAEAL+LLD CG+D+IELGVP SDP DGP+IQA+ R+LA GT +A+L ML+EV P++SCP+ L +YY PI+ R ++ +++ G+ GL+VPD+P SL EA N +ELVL TTP P DRMK I +ASEGFVYLVS GVTG RA+++ V++L++E+K+ T KPVAVGFGISKPEHV+Q+A WGADGVI+GSAMV+ LGEA SP++GL+ LE++A +K+ALP Sbjct: 100 KGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRS----LAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALP 347
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP8 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 8801) GN=trpA PE=3 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 2.829e-80 Identity = 151/255 (59.22%), Postives = 188/255 (73.73%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSALP*EQ 770 R + ALIP+ITAGDPDL TTA+AL+LLD+ G+D+IELGVPYSDPLADGPVIQAAATR+L RG +L ++KEV P+I PI LFTYYNPI RGV+ F+ V+ G++GLVVPD+PLEE ESL K A + I + L PT+P +R++AI S+GF+YLVS GVTG R+ ++ V+ LL ++ +T KP+ VGFGISKPEH QV WGAD VIVGSAMVK L E +PEEGLK + F LK AL +Q Sbjct: 14 RRQCALIPFITAGDPDLETTAKALRLLDASGADLIELGVPYSDPLADGPVIQAAATRALGRGVKLEDVLGVVKEVSPEIKAPIILFTYYNPIFYRGVEAFLQQVKAAGVQGLVVPDLPLEEAESLLKPAHEVGIAVTLLVAPTSPIERIEAIARQSQGFIYLVSVTGVTGMRSQVTSRVKELLTSLRSATDKPIGVGFGISKPEHALQVKNWGADAVIVGSAMVKRLAEG-TPEEGLKAIGAFCQDLKQALKEDQ 267
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_TRIEI (Tryptophan synthase alpha chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpA PE=3 SV=1) HSP 1 Score: 290.041 bits (741), Expect = 1.006e-77 Identity = 146/247 (59.11%), Postives = 187/247 (75.71%), Query Frame = 3 Query: 18 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 ALIP+ITAGDPDL TTA+AL++LD G+++IELGVPYSDPLADGPVIQAAATRSL RGT ++L +++ V P++ PI LFTYYNPIL RGV+NF+ + D+G RGLVVPD+PLEE + L + A IEL L PT+P +R+KAI S+GF+YLVS GVTG RA + V+ LL +++E T KP+ VGFGIS+PE QV WG+D VIVGSA+VK L E SP+EGLK + +F +LK+A+ Sbjct: 19 ALIPFITAGDPDLETTAKALEVLDRSGANMIELGVPYSDPLADGPVIQAAATRSLNRGTTLESVLEVVQTVSPKLRSPIILFTYYNPILYRGVENFLKKIYDVGARGLVVPDLPLEEADILLEPAKDIGIELTLLVAPTSPKERIKAIAHQSQGFIYLVSVTGVTGMRAQMQTRVEDLLAQMREVTDKPIGVGFGISQPEQALQVKKWGSDAVIVGSAVVKRLAEG-SPDEGLKAIGEFCQNLKAAI 264
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_CYAP4 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=trpA PE=3 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 1.113e-76 Identity = 142/251 (56.57%), Postives = 181/251 (72.11%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 R + ALIP+ITAGDP L TA+AL++LD G+D+IELGVPYSDPLADGP IQAAATR+L +GT +A+L M+ V P + P+ LFTYYNPI RGV+ F+ V G++GLVVPD+PLEE +++ +A IEL L PTTP R+ AI E S+GF+YLVS+ GVTG R+ + G V LL E+++ T KP+ VGFGIS+PEH +QV WGAD IVGSA VK L E +PE+GL + F SLK+AL Sbjct: 14 RAQCALIPFITAGDPSLEITAKALQVLDQQGADLIELGVPYSDPLADGPTIQAAATRALQKGTRLDAVLEMISHVAPNLRSPLILFTYYNPIFHRGVEPFLQQVAQAGVQGLVVPDLPLEEADTVLTQAAAVGIELTLLVAPTTPRSRIAAIAERSQGFIYLVSTTGVTGMRSKVEGRVHELLLELQQVTDKPIGVGFGISQPEHARQVMEWGADAAIVGSAFVKRLAEG-TPEQGLAAIADFCRSLKTAL 263
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_MICAN (Tryptophan synthase alpha chain OS=Microcystis aeruginosa (strain NIES-843) GN=trpA PE=3 SV=1) HSP 1 Score: 285.804 bits (730), Expect = 1.898e-76 Identity = 143/252 (56.75%), Postives = 182/252 (72.22%), Query Frame = 3 Query: 3 TRGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 ++G ALIP+ITAGDPDLSTTA+AL++LD G+D+IELGVPYSDPLADGPVIQ+AATR+L RG +L ++K ++ PI LFTYYNPI RG+D F+ ++ G+ GLVVPD+PLEE ESL + A IE++L PT+P +R++AI S+GF+YLVS GVTG R ++ V+ LL I+ T KPV VGFGIS+P QV WGAD VIVGSAMVK L + SP +GLK LE+F SLK A+ Sbjct: 13 SQGNCALIPFITAGDPDLSTTAQALRILDRAGADLIELGVPYSDPLADGPVIQSAATRALNRGVKLEDVLEIVKNAQGEVKAPIILFTYYNPIYHRGIDVFLDQIKAAGVSGLVVPDLPLEEAESLLQPAAAKGIEVILLVAPTSPPERIQAIALQSQGFIYLVSVTGVTGMRKQVATRVEELLDSIRSVTDKPVGVGFGISEPTQALQVKNWGADAVIVGSAMVKRLAD-NSPSDGLKSLEEFCRSLKQAI 263
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYNY3 (Tryptophan synthase alpha chain OS=Synechocystis sp. (strain PCC 6803) GN=trpA PE=3 SV=1) HSP 1 Score: 284.263 bits (726), Expect = 5.522e-76 Identity = 139/251 (55.38%), Postives = 186/251 (74.10%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 RG+ ALIP++TAGDPDL+TTAEAL++LD G+D+IELGVPYSDPLADGPVIQAAATR+L +G + +L++++EV I+ PI LFTYYNPI +GV+ F+ ++ G++GLVVPD+PLEE++ L + + +EL+L PT+ +R AI + S+GFVYLVS GVTG R + V+ LL +++ T KP+ VGFGIS+PE +QV WGAD VIVGSAMVK L E +P EGL+ LE F LK+A+ Sbjct: 14 RGECALIPFLTAGDPDLATTAEALRILDRAGADLIELGVPYSDPLADGPVIQAAATRALQKGVKLDDVLAIVREVHQDIAAPIILFTYYNPIFYQGVEVFLDKIKAAGVKGLVVPDLPLEESDRLLEATAERGLELILLVAPTSSPERQTAIAKKSQGFVYLVSVTGVTGVRTEVGSRVEALLAGMRQVTDKPIGVGFGISQPEQAEQVKAWGADAVIVGSAMVKRLAEG-TPTEGLQALETFCRELKTAI 263
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_SYNP2 (Tryptophan synthase alpha chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=trpA PE=3 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 9.419e-76 Identity = 137/250 (54.80%), Postives = 188/250 (75.20%), Query Frame = 3 Query: 9 GKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 G+ ALIP+ITAGDPDL TT +ALK+LD+ G+D IELGVPYSDPLADGP IQAAATR+L+RG +L++++ V Q++ PI LFTYYNPI RG+D FM+ V G++GLV+PD+PLEE++ + A + ++L+L PT+PT+R++AI +AS+GF+YLVS GVTGAR S++ V LL ++++ T KP+ VGFG+S P +Q+ WGADGVIVGSA+VK L +P EGL +++F SLK A+ Sbjct: 15 GQCALIPFITAGDPDLETTEQALKILDAAGADFIELGVPYSDPLADGPTIQAAATRALSRGVTLEQVLAIVQRVHGQLTAPIILFTYYNPIFYRGIDAFMAQVAAAGVKGLVIPDLPLEESQMVLDAATSHGLDLILLVAPTSPTERIEAIAKASQGFIYLVSVTGVTGARTSVASRVGELLPKLRQVTDKPIGVGFGVSDPAQARQLKEWGADGVIVGSAVVKRLATG-TPAEGLAAVKEFCESLKEAI 263
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_ACAM1 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) GN=trpA PE=3 SV=1) HSP 1 Score: 283.493 bits (724), Expect = 9.419e-76 Identity = 140/251 (55.78%), Postives = 182/251 (72.51%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 RG+ ALIP++TAGDPDL+TTA AL+ LD+ G+D+IELGVPYSDPLADGPVIQAAATR+L RGT + +L M+ E+ P+I PI LFTYYNPI RGV F+ + G+RGLVVPD+PLEE+E+L ++A IE+ L PT+ +R++ I S+GF+YLVS+ GVTG R + VQ L+ ++++ T KP+ VGFGIS+ EH +QV WGAD IVGSA V L E SP +GL + F SLKS+L Sbjct: 14 RGQCALIPFLTAGDPDLATTASALRQLDASGADLIELGVPYSDPLADGPVIQAAATRALQRGTRLDQVLEMVTELSPEIRAPIILFTYYNPIYHRGVAEFLQQIAKAGVRGLVVPDLPLEESENLLQQAADLGIEVTLLVAPTSSKERIEKIALRSQGFIYLVSTTGVTGMRTKVENRVQDLIADLRQVTDKPIGVGFGISRTEHARQVMDWGADAAIVGSAFVNRLSEG-SPSQGLSAISTFCRSLKSSL 263
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_CYAA5 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain ATCC 51142) GN=trpA PE=3 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 2.098e-75 Identity = 138/251 (54.98%), Postives = 184/251 (73.31%), Query Frame = 3 Query: 6 RGKVALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 R + LIP+ITAGDPDL TTA+AL++LD+ G+D+IELGVPYSDPLADGPVIQAAA+R+L RG +L+++K V I PI LF+YYNPI RG++ F+ ++ G++GLVVPD+PLEE E+L K A + IE+ L PT+P +R+KAI S+GF+YLVS GVTG R ++ V+ LL+ ++ +T KP+ VGFGIS+PEH QV WG+D VIVGSA VK L + +PEEGLK + +F LK A+ Sbjct: 14 RKQCGLIPFITAGDPDLETTAKALRVLDASGADLIELGVPYSDPLADGPVIQAAASRALRRGVKLEDVLNIVKGVQGDIKAPIILFSYYNPIFYRGIEAFLEQIKSAGVKGLVVPDLPLEEAETLLKPAAEMGIEVTLLVAPTSPIERIKAIAHQSQGFIYLVSVTGVTGMRTQVATRVEDLLKSLRNTTDKPIGVGFGISEPEHALQVKNWGSDAVIVGSACVKRLAQG-TPEEGLKAVGEFCQRLKQAI 263
BLAST of FC877280 vs. ExPASy Swiss-Prot
Match: TRPA_ANAVT (Tryptophan synthase alpha chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpA PE=3 SV=1) HSP 1 Score: 281.182 bits (718), Expect = 4.675e-75 Identity = 140/247 (56.68%), Postives = 178/247 (72.06%), Query Frame = 3 Query: 18 ALIPYITAGDPDLSTTAEALKLLDSCGSDIIELGVPYSDPLADGPVIQAAATRSLARGTNFNAILSMLKEVVPQISCPIALFTYYNPILKRGVDNFMSTVRDIGIRGLVVPDVPLEETESLQKEAMKNKIELVLFTTPTTPTDRMKAIVEASEGFVYLVSSIGVTGARASISGHVQTLLREIKESTTKPVAVGFGISKPEHVQQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKELEKFAXSLKSAL 758 ALIP+ITAGDPDL TTA ALK+LDS G+DIIELG+PYSDPLADGPVIQAAATR+L GT ++L MLK P + PI LFTYYN IL RG+DNF+ V G+ GLVVPD+PLEE L K A + I+L+L PT+ ++R++AI +S+GF+YLVS GVTG R+ + G V LL+++++ T KP+ VGFGIS+P QV WGAD IVGSA V+ L +P EGL + +F SLK+A+ Sbjct: 18 ALIPFITAGDPDLETTAAALKILDSNGADIIELGIPYSDPLADGPVIQAAATRALQNGTKLESVLEMLKVTTPSLQAPIVLFTYYNSILHRGIDNFLEQVAAAGVAGLVVPDLPLEEAAGLLKPATERGIDLILLIAPTSSSERIEAIARSSQGFIYLVSVTGVTGMRSQVEGRVLDLLQKVRQVTDKPLGVGFGISQPAQATQVRDWGADAAIVGSAFVQRLATG-TPAEGLSAIAEFCQSLKAAI 263 The following BLAST results are available for this feature:
BLAST of FC877280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877280 ID=FC877280; Name=FC877280; organism=Citrus clementina; type=EST; length=804bpback to top |