FC877283
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.456e-38 Identity = 98/189 (51.85%), Postives = 118/189 (62.43%), Query Frame = 1 Query: 10 PAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 576 P G P+P+FF +QQ P+M QM PRG +RYP GR G G +P P DMG +P + I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA A +QLASL+L+ Sbjct: 465 PGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQH--SQQQNPMMQQQMHPRGRMFRYPQGR---------GGSGDVP-PYDMGNNMP---------LTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23 Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 1 Query: 223 GMLPVPVDMGAGIPRRDASVGQPMPITA--LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 579 G++P+P++ A +P P+T L++ LA ASP++ +LG+ LYPLVEQ E AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR A A + D +LS +E Sbjct: 548 GIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21 Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 1 Query: 139 HQMPPRGHAYRYPL--GRNMQDFPFDMGA-GGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 516 H+ P G Y GRN D G ++P+P+D + I + A + +PI+ L+++LA+ASP + +LGE LYPLVE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR Sbjct: 520 HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPID-ASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18 Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 1 Query: 214 GAGGMLPVPVDMGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 549 G G +P+ M G R +VGQP P T + AL+ A P+QQ+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V + +++ PA Sbjct: 599 GGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17 Identity = 64/171 (37.43%), Postives = 84/171 (49.12%), Query Frame = 1 Query: 121 PLPIMPHQMP--PRGHAYRYPLGRNMQDF---------PFDMG-----AGGMLPVPVDMGAGIPRRDASVGQPMPI----------------TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 537 P +MP MP P G ++P G Q + P G AG P V+ GA P GQPMP + ALA ASPE+Q+ +LGE++YP V + + A K+TGM+LE+ TE+LHLLE EAL AKV EA+EVL+ Q + Sbjct: 466 PAGMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVN-GAPRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16 Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1 Query: 295 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 573 P+TA S LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA + + A SL Sbjct: 541 PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQSL 628
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15 Identity = 60/154 (38.96%), Postives = 77/154 (50.00%), Query Frame = 1 Query: 118 QPLPI------MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGGML---PVPVDMGAGIPRRDASVGQPMPITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 513 QPLP MP Q+P G A YP+ P A G P PV G+P G MP A LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLEMD E+LHL+ES AL+ KV EA+ VL Sbjct: 489 QPLPGGVPAYGMPPQVPYPG-APGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15 Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 1 Query: 154 RGHAYRYPLGRNMQDFPFDMGAGGMLPVPVDMGAGIPRRD------ASVGQPMPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 510 RG P+G+ M+ + G GG+ PV M G R A G+ P L+ +LA A QQ+ +LGE+LYP ++ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V Sbjct: 594 RGQVPGMPMGQGMRGPGYGQGRGGV-PVQGQMRPGQGGRGQNAQPAAGRGEEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSV 718
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15 Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1 Query: 202 PFDMGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 519 P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ Sbjct: 522 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15 Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 1 Query: 307 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 516 +++ LANA P++Q+ +LGE LYP++E + + A K+TGMLLE++ +E+LH++E EALKAKV EA+ VL+ Sbjct: 556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625 The following BLAST results are available for this feature:
BLAST of FC877283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877283 ID=FC877283; Name=FC877283; organism=Citrus clementina; type=EST; length=683bpback to top |