FC877283

Overview
NameFC877283
Unique NameFC877283
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13314 contig Ccv1_Contig13314:688..1370. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.456e-38
Identity = 98/189 (51.85%), Postives = 118/189 (62.43%), Query Frame = 1
Query:   10 PAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLN 576
            P G P+P+FF                        +QQ  P+M  QM PRG  +RYP GR         G  G +P P DMG  +P         + I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA   A    +QLASL+L+
Sbjct:  465 PGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQH--SQQQNPMMQQQMHPRGRMFRYPQGR---------GGSGDVP-PYDMGNNMP---------LTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNLS 629          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.410e-23
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  223 GMLPVPVDMGAGIPRRDASVGQPMPITA--LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNE 579
            G++P+P++  A          +P P+T   L++ LA ASP++   +LG+ LYPLVEQ E   AAKVTGMLLEMDQ E+LHLLESPEALKAKV+EA++VLR  A   A +  D   +LS +E
Sbjct:  548 GIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKAKVSEALDVLRRSADPAAVSSVDDQFALSSSE 668          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 62/129 (48.06%), Postives = 85/129 (65.89%), Query Frame = 1
Query:  139 HQMPPRGHAYRYPL--GRNMQDFPFDMGA-GGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 516
            H+ P  G  Y      GRN  D     G    ++P+P+D  + I  + A +   +PI+ L+++LA+ASP  +  +LGE LYPLVE+ E    AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct:  520 HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPID-ASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.189e-18
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 1
Query:  214 GAGGMLPVPVDMGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 549
            G  G +P+   M  G   R  +VGQP P T +      AL+ A P+QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V     + +++ PA
Sbjct:  599 GGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 64/171 (37.43%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  121 PLPIMPHQMP--PRGHAYRYPLGRNMQDF---------PFDMG-----AGGMLPVPVDMGAGIPRRDASVGQPMPI----------------TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 537
            P  +MP  MP  P G   ++P G   Q +         P   G     AG   P  V+ GA  P      GQPMP                    + ALA ASPE+Q+ +LGE++YP V   + + A K+TGM+LE+  TE+LHLLE  EAL AKV EA+EVL+   Q  +
Sbjct:  466 PAGMMPQGMPMAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVN-GAPRPAGQPVPGQPMPRGPAARPAGRPEADQPGALTAAALAKASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVLKEYQQNDS 635          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  295 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 573
            P+TA S  LA+A P++Q+ +LGE LYPL+ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++    QA   + + A  SL
Sbjct:  541 PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENSQKSAQQSL 628          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 60/154 (38.96%), Postives = 77/154 (50.00%), Query Frame = 1
Query:  118 QPLPI------MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGGML---PVPVDMGAGIPRRDASVGQPMPITALSTA-------------LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 513
            QPLP       MP Q+P  G A  YP+       P    A G     P PV    G+P      G  MP      A             LA A+P +Q+ +LGE+LYPL+ + + + A K+TGMLLEMD  E+LHL+ES  AL+ KV EA+ VL
Sbjct:  489 QPLPGGVPAYGMPPQVPYPG-APGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRVL 641          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  154 RGHAYRYPLGRNMQDFPFDMGAGGMLPVPVDMGAGIPRRD------ASVGQPMPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 510
            RG     P+G+ M+   +  G GG+ PV   M  G   R       A  G+  P   L+  +LA A   QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V
Sbjct:  594 RGQVPGMPMGQGMRGPGYGQGRGGV-PVQGQMRPGQGGRGQNAQPAAGRGEEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSV 718          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  202 PFDMGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 519
            P+   +    P P       P+    V    P+TA  + LA A P++Q+ +LGE L+PL++ +  + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++
Sbjct:  522 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA 625          
BLAST of FC877283 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 36/70 (51.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  307 LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 516
            +++ LANA P++Q+ +LGE LYP++E +  + A K+TGMLLE++ +E+LH++E  EALKAKV EA+ VL+
Sbjct:  556 IASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMIEDQEALKAKVEEAVAVLQ 625          
The following BLAST results are available for this feature:
BLAST of FC877283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PABP2_ARATH3.456e-3851.85Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP5_ARATH1.410e-2351.24Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP3_ARATH1.723e-2148.06Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABP_EMENI5.189e-1843.97Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_USTMA9.786e-1737.43Polyadenylate-binding protein, cytoplasmic and nuc... [more]
EPAB_XENTR8.284e-1648.39Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP_CRYNE1.082e-1538.96Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN1.413e-1542.06Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP4_HUMAN1.846e-1540.57Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_DROME2.410e-1551.43Polyadenylate-binding protein OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BG09RM1 EHR Citrus clementina cDNA clone KN0AAN2BG09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877283 ID=FC877283; Name=FC877283; organism=Citrus clementina; type=EST; length=683bp
GCACGAGGGCCTGCTGGGGCACCGATGCCGAACTTCTTTGTTCCAGTGGT
CTCGCAAGGTCAGCAGGGCCAGCGTCCTGGTGGACGACGTGGTGCTGGAC
CTGTGCAACAGACCCAGCAGCCACTCCCCATTATGCCGCACCAGATGCCT
CCCAGGGGTCATGCCTATCGGTACCCACTTGGCCGTAATATGCAAGATTT
CCCCTTTGACATGGGTGCTGGCGGTATGCTCCCTGTTCCCGTTGACATGG
GCGCTGGCATACCTCGGCGAGATGCATCTGTTGGACAACCTATGCCGATA
ACGGCTTTGTCTACTGCTCTTGCAAATGCATCACCAGAACAGCAAAGGAC
GCTGCTGGGTGAAAGTTTATATCCTCTAGTGGAGCAGCTGGAGCGAGATG
CAGCGGCTAAGGTAACGGGAATGCTCTTGGAGATGGACCAGACAGAGGTT
TTGCATCTTCTTGAGTCACCAGAGGCTTTGAAGGCGAAAGTAGCTGAGGC
AATGGAGGTTTTGAGGAGTGTTGCTCAGCAGCAGGCTAATAATCCAGCAG
ATCAACTGGCTTCATTGTCCCTGAATGAAAACCTTGTTTCTTGAGCGCGT
TGCTGTCATTGAAAAAGTTTGGATTAGTTGTGGTTTCAAACAATTAAAGT
CTTTGTTTTTGGCATGGATGGTGTAGGTGTTTG
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