FC877806

Overview
NameFC877806
Unique NameFC877806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length836
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877806_ssr382 microsatellite FC877806_ssr382:382..399. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13269 contig Ccv1_Contig13269:33..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877806 vs. ExPASy Swiss-Prot
Match: CBAA1_MACFA (Calcium-binding atopy-related autoantigen 1 OS=Macaca fascicularis GN=CBARA1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.099e-13
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  478 YRRKIFFNYEKRIRLRSPPEKVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGYL----RGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVALQMFD 834
            +R +    YE RIR  S P+K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y+     G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +A +MFD
Sbjct:  106 FRDRKVMEYENRIRAYSTPDKIFRYFATLKVINEPGEAEVFMTPEDFVRSITPNEKQPE-HLGLDQYIIKRFDGKKISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFD 231          
BLAST of FC877806 vs. ExPASy Swiss-Prot
Match: CBAA1_HUMAN (Calcium-binding atopy-related autoantigen 1 OS=Homo sapiens GN=CBARA1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.099e-13
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  478 YRRKIFFNYEKRIRLRSPPEKVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGYL----RGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVALQMFD 834
            +R +    YE RIR  S P+K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y+     G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +A +MFD
Sbjct:  106 FRDRKVMEYENRIRAYSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPE-HLGLDQYIIKRFDGKKISQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFD 231          
BLAST of FC877806 vs. ExPASy Swiss-Prot
Match: CBAA1_MOUSE (Calcium-binding atopy-related autoantigen 1 OS=Mus musculus GN=Cbara1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.436e-13
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  478 YRRKIFFNYEKRIRLRSPPEKVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGYL----RGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVALQMFD 834
            +R +    YE RIR  S P+K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y+     G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +A +MFD
Sbjct:  108 FRDRKVMEYENRIRAYSTPDKIFRYFATLKVINEPGETEVFMTPQDFVRSITPNEKQPE-HLGLDQYIIKRFDGKKIAQEREKFADEGSIFYSLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFD 233          
BLAST of FC877806 vs. ExPASy Swiss-Prot
Match: CBAA1_RAT (Calcium-binding atopy-related autoantigen 1 OS=Rattus norvegicus GN=Cbara1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.875e-13
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  478 YRRKIFFNYEKRIRLRSPPEKVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGYL----RGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVALQMFD 834
            +R +    YE RIR  S P+K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y+     G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +A +MFD
Sbjct:  108 FRDRKVMEYENRIRAYSTPDKIFRYFATLKVINEPGETEVFMTPQDFVRSITPNEKQPE-HLGLDQYIIKRFDGKKIAQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFD 233          
BLAST of FC877806 vs. ExPASy Swiss-Prot
Match: CBAA1_BOVIN (Calcium-binding atopy-related autoantigen 1 OS=Bos taurus GN=CBARA1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.875e-13
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  478 YRRKIFFNYEKRIRLRSPPEKVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSESHLVRDGY----LRGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVALQMFD 834
            +R +    YE RIR  S P+K+F YFA+L+      E E+ M P D +R+I P     E HL  D Y      G++   E      E  + + +   GLISF +YIF  T+LS P+ +F +A +MFD
Sbjct:  108 FRDRKVMEYENRIRAYSTPDKIFRYFATLKVISEHGESEVFMTPQDFVRSITPNEKQPE-HLGLDQYTIKRFDGKKIAQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFD 233          
BLAST of FC877806 vs. ExPASy Swiss-Prot
Match: CBAA1_DANRE (Calcium-binding atopy-related autoantigen 1 OS=Danio rerio GN=cbara1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.107e-11
Identity = 43/130 (33.08%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  478 YRRKIFFNYEKRIRLRSPPEKVFEYFASLR----SPEGELLMRPADLMRAIVPVFPPSES-----HLVR--DGYLRGERRPGELRCAPSEFFMLFDMNNDGLISFKEYIFFVTLLSIPESSFSVALQMFD 834
            +R +    YE RIR  S P+K+F YFA+L+      + E+ M P D +R+I P     E+      +V+  DG    ++   +      E  + + +   GLISF +YIF  T+LS P+ +F +A +MFD
Sbjct:  113 FRDRKVMEYENRIRAYSTPDKIFRYFATLKIINEHGDAEVYMTPQDFVRSITPNEKQPENLGLDQFMVKRYDGKDFWQKISQDREKFADEDSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFD 242          
The following BLAST results are available for this feature:
BLAST of FC877806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CBAA1_MACFA1.099e-1337.01Calcium-binding atopy-related autoantigen 1 OS=Mac... [more]
CBAA1_HUMAN1.099e-1337.01Calcium-binding atopy-related autoantigen 1 OS=Hom... [more]
CBAA1_MOUSE1.436e-1337.01Calcium-binding atopy-related autoantigen 1 OS=Mus... [more]
CBAA1_RAT1.875e-1337.01Calcium-binding atopy-related autoantigen 1 OS=Rat... [more]
CBAA1_BOVIN1.875e-1337.01Calcium-binding atopy-related autoantigen 1 OS=Bos... [more]
CBAA1_DANRE5.107e-1133.08Calcium-binding atopy-related autoantigen 1 OS=Dan... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877806 ID=FC877806; Name=FC877806; organism=Citrus clementina; type=EST; length=836bp
TTAGCCAATCTTTTGCTTTTCCATATTCTCAATAATCGATTTGTCATAAT
GACTATTCATCTTCGAAGATCCTCACCCTCCATCCACCAGCTGGCCCAAA
TCCAACGGCTCCATTCCCGCCAACTCTCCGCCCCACCAGAATCTCCCTCC
GCCTCACTGCCTGTGCTCAGCAAGGCCTCAAACGCCAACACCGATCACCT
CAAAGATTGCATTTTCGATTCTCTAGCTAGATGGTTCTCGGGGATCGTAG
TTGGCTCCAGCCTAGGGTTACTCTACTGGTCTTCCAATTCTGATTCCATT
TCCACCAAGTCTTCCCTCTTTCCAGTGTCGTTTTTGTCTTTTGCTGACTG
GTCAATGTCGACGTTGACCAATGACACCACCGATGATGATGATGATGATC
GTCAGAGCTCTTCCAGTTCTTTATTTCGCAAATTGTCTTTGCCAGATTAC
AGCTCTAACTTTCTCTTCGGAGAGGCATATAGAAGAAAGATTTTCTTTAA
CTACGAGAAGCGAATTAGGTTGCGGAGTCCACCTGAGAAGGTGTTTGAGT
ACTTTGCGTCTTTACGATCACCGGAAGGAGAATTGCTCATGAGACCAGCA
GATTTGATGCGAGCCATCGTTCCTGTATTTCCTCCCTCTGAATCACACCT
TGTCAGAGATGGATATTTGAGAGGGGAAAGGAGGCCTGGGGAGTTAAGAT
GTGCTCCTTCAGAATTTTTTATGCTCTTTGATATGAACAATGATGGATTG
ATATCTTTCAAAGAATATATCTTTTTTGTAACTCTACTCAGCATTCCGGA
ATCAAGCTTTTCTGTGGCCCTTCAGATGTTTGACAT
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