FC877834

Overview
NameFC877834
Unique NameFC877834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length923
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11480 contig Ccv1_Contig11480:131..1053. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.386e-66
Identity = 155/299 (51.84%), Postives = 193/299 (64.55%), Query Frame = 1
Query:   55 MSPASA--DDNPLLFINQKPNVELQNQNXXXXXXXXXXXXINKELESEPINDYSSVISIDMP---YSNGSSSNELPNYPLLLSFNNLSYSVKVGQKLLP-----DLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +SPA     D   LF N   +VELQ  +            +   +E E  +D S  + I +    +S+  SS    + P +LSF +L+YSVK+ +K  P     + PF G+             ISG AREGE+ A+LGASGS K+TL+DA+A RISK+ L+G +TLNGEVL S L K+ISAYVMQDDLL+ MLT+EETLMFSAEFRLP SLSK+KK+ RV ALIDQLGLR+AA T+IGDE H               DIIHDPI+LFLDEP SGLD TSA+ VVKVL++IA+SGSIVI
Sbjct:    8 LSPAKRVNGDGLPLFYNIHKSVELQRCHRDTARVSVTLAELLMSVEDEG-DDQSRAMDIAVASNFWSSVPSSRVPSSSPFVLSFKDLTYSVKIKKKFKPFPCCGNSPFDGNDMEMNTKVLLNG-ISGEAREGEMMAVLGASGSGKSTLIDALANRISKESLRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPSSLSKKKKKARVQALIDQLGLRNAAKTVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVI 304          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.523e-64
Identity = 152/302 (50.33%), Postives = 188/302 (62.25%), Query Frame = 1
Query:   22 HYHFPLAKNPTMSPASADDNPLLFINQKPNVE-LQNQNXXXXXXXXXXXXINKELESEPINDYSSVISIDMPYSNGSSSNELPNYPLLLSFNNLSYSVKVGQKLLPDLPFFGS-QXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +Y  P++  P   P+      + F     NVE  +N              IN    S   N ++S      P S+ SSS      P +LSF +L+YSVK+ +K  P      S              ISG AREGE+ A+LGASGS K+TL+DA+A RI+K  L+G++TLNGEVL S + K+ISAYVMQDDLL+ MLT+EETLMFSAEFRLPRSLSK+KK+ RV ALIDQLGLRSAA T+IGDE H               DIIHDPI+LFLDEP SGLD TSA+ V+KVL++IA+SGSIVI
Sbjct:   23 YYVNPMSVEPQGRPSDTTRVSVTFAEHLMNVEDARNDESASSRALGIASPINSAASS--FNSWASA-----PASSISSS------PFVLSFTDLTYSVKIQKKFNPLACCRRSGNDSSVNTKILLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIAKDSLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKKKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGNDIIHDPIILFLDEPTSGLDSTSAYMVIKVLQRIAQSGSIVI 311          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB16G_ARATH (ABC transporter G family member 16 OS=Arabidopsis thaliana GN=ABCG16 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 6.010e-64
Identity = 137/228 (60.09%), Postives = 166/228 (72.81%), Query Frame = 1
Query:  241 NGSSSNELPNYPLLLSFNNLSYSVKVGQKL-LPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +G + + +   P +LSFNNL+Y+V V +KL   DL  +  +            ISG  R+GEI A+LGASGS K+TL+DA+A RI+K  LKGTVTLNGE L S++LK+ISAYVMQDDLL+ MLT+EETLMF+AEFRLPRSL K KK+ RV ALIDQLG+R+AA TIIGDE H               DIIHDPI+LFLDEP SGLD TSAF VVKVLK+IA+SGSI+I
Sbjct:   59 DGDNDHLMRPVPFVLSFNNLTYNVSVRRKLDFHDLVPW-RRTSFSKTKTLLDNISGETRDGEILAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEALQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLKRIAESGSIII 285          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB1G_ARATH (ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.933e-62
Identity = 139/246 (56.50%), Postives = 168/246 (68.29%), Query Frame = 1
Query:  220 SIDMPYSNGSSSNELPNYPLLLSFNNLSYSVKVGQKLL------------PDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            S++  Y++G     +   P +LSF+NL+Y+V V  KL             P++    +Q            ISG  R+GEI A+LGASGS K+TL+DA+A RI+K  LKGTV LNGE L S++LK+ISAYVMQDDLL+ MLT+EETLMF+AEFRLPRSL K KK+ RV ALIDQLG+R+AA TIIGDE H               DIIHDPILLFLDEP SGLD TSAF VVKVLK+IA+SGSIVI
Sbjct:   50 SLNQDYNDGY----MRTVPFVLSFDNLTYNVSVRPKLDFRNLFPRRRTEDPEI----AQTARPKTKTLLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSRMLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKTIIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGSIVI 287          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB6G_ARATH (ABC transporter G family member 6 OS=Arabidopsis thaliana GN=ABCG6 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.298e-62
Identity = 136/224 (60.71%), Postives = 158/224 (70.54%), Query Frame = 1
Query:  274 PLLLSFNNLSYSVKVGQKLL--------PDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            P +LSF +L+YSVKV +K          P  P  G              I+G AR+GEI A+LGASGS K+TL+DA+A RI+K  LKG VTLNGEVL SK+ K ISAYVMQDDLL+ MLT+EETLMF+AEFRLPRSLSK KK  RV ALIDQLGLR+AA T+IGDE H               DIIHDPILLFLDEP SGLD TSA +V+KVLK+IA+SGS+VI
Sbjct:   65 PFVLSFTDLTYSVKVRRKFTWRRSVSSDPGAPSEG--IFSSKTKTLLNGITGEARDGEILAVLGASGSGKSTLIDALANRIAKGSLKGNVTLNGEVLNSKMQKAISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKSLRVQALIDQLGLRNAANTVIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKRIAQSGSMVI 286          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB18G_ARATH (ABC transporter G family member 18 OS=Arabidopsis thaliana GN=ABCG18 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.637e-61
Identity = 131/222 (59.01%), Postives = 163/222 (73.42%), Query Frame = 1
Query:  259 ELPNYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE-VLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            E  + P LLSFNNLSY+V + ++      F  S+            I+G AR+GEI A+LG SG+ K+TL+DA+AGR+++  LKGTVTLNGE VL S+LLK+ISAYVMQDDLL+ MLT++ETLMF++EFRLPRSL K KK +RV+ LIDQLGLR+AA T+IGDE H               DIIHDPILLFLDEP SGLD T+AF VV+VLK+IA+SGS+VI
Sbjct:   55 ETRSVPFLLSFNNLSYNVVLRRR------FDFSRRKTASVKTLLDDITGEARDGEILAVLGGSGAGKSTLIDALAGRVAEDSLKGTVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLPKSKKMERVETLIDQLGLRNAADTVIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSVVI 270          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB17G_ARATH (ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.637e-61
Identity = 131/222 (59.01%), Postives = 163/222 (73.42%), Query Frame = 1
Query:  256 NELPNYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            +E+P  P +L+FN+L+Y+V + Q+    L F  S             I+G A+EGEI AILGASG+ K+TL+DA+AG+I++  LKGTVTLNGE L S+LL++ISAYVMQ+DLL+ MLT+EETLMF+AEFRLPRSLSK KKR RV+ LIDQLGL +   T+IGDE H               DIIHDPI+LFLDEP SGLD TSAF VV+VLK+IA+SGSIVI
Sbjct:   13 SEIPPIPFVLAFNDLTYNVTLQQRF--GLRFGHSPAKIKTLLNG---ITGEAKEGEILAILGASGAGKSTLIDALAGQIAEGSLKGTVTLNGEALQSRLLRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLSKSKKRNRVETLIDQLGLTTVKNTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVQVLKKIARSGSIVI 229          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB19G_ARATH (ABC transporter G family member 19 OS=Arabidopsis thaliana GN=ABCG19 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.929e-59
Identity = 126/217 (58.06%), Postives = 160/217 (73.73%), Query Frame = 1
Query:  274 PLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGE-VLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            P +L+FNNL Y V + ++       FG              +SG A +G+I A+LGASG+ K+TL+DA+AGR+++  L+G+VTLNGE VL S+LLK+ISAYVMQDDLL+ MLT++ETLMF++EFRLPRSLSK KK +RV+ALIDQLGLR+AA T+IGDE H               DIIHDPI+LFLDEP SGLD T+AF VV+VLK+IA+SGSIVI
Sbjct:   70 PYVLNFNNLQYDVTLRRR-------FGFSRQNGVKTLLDD-VSGEASDGDILAVLGASGAGKSTLIDALAGRVAEGSLRGSVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLSKSKKMERVEALIDQLGLRNAANTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVI 278          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB9G_ARATH (ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.144e-30
Identity = 86/244 (35.25%), Postives = 129/244 (52.87%), Query Frame = 1
Query:  217 ISIDMPYSNGSSSNELP-------NYPLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRIS--KQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            + ++ P +  +    LP       N P+ L F NL Y+VK     L D      +            ++G+ + GEI A+LG SGS KT+L+ A+ GR+   K +L G ++ N + L SK +K  + +V QDD LY  LT+ ETL+F+A  RLP S  K++K K+  A++ +LGL     TIIG                   +I+ +P LLFLDEP SGLD T+A  +V +L ++A+ G  V+
Sbjct:    8 MDVETPIAKTNDDRSLPFSIFKKANNPVTLKFENLVYTVK-----LKDSQGCFGKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYNNKPL-SKAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILWELARGGRTVV 245          
BLAST of FC877834 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.415e-30
Identity = 79/216 (36.57%), Postives = 125/216 (57.87%), Query Frame = 1
Query:  274 PLLLSFNNLSYSVKVGQKLLPDLPFFGSQXXXXXXXXXXXXISGVAREGEITAILGASGSSKTTLMDAIAGRISKQRLKGTVTLNGEVLGSKLLKIISAYVMQDDLLYSMLTIEETLMFSAEFRLPRSLSKEKKRKRVDALIDQLGLRSAAMTIIGDEQHXXXXXXXXXXXXXXXDIIHDPILLFLDEPISGLDFTSAFNVVKVLKQIAKSGSIVI 921
            P++L F  L+YS+K   +      +FGSQ            +SG+ + GE+ A+LG SGS KTTL+ A+AGR+ + +L GTV+ NGE   S + K  + +V QDD+LY  LT+ ETL ++A  RLP+ L++++K ++V+ ++  LGL     ++IG                   +++ +P LL LDEP SGLD T+A  +V  L+ +A+ G  V+
Sbjct:   65 PIILKFEELTYSIK--SQTGKGSYWFGSQEPKPNRLVLKC-VSGIVKPGELLAMLGPSGSGKTTLVTALAGRL-QGKLSGTVSYNGEPFTSSV-KRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVV 275          
The following BLAST results are available for this feature:
BLAST of FC877834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
AB20G_ARATH8.386e-6651.84ABC transporter G family member 20 OS=Arabidopsis ... [more]
AB2G_ARATH3.523e-6450.33ABC transporter G family member 2 OS=Arabidopsis t... [more]
AB16G_ARATH6.010e-6460.09ABC transporter G family member 16 OS=Arabidopsis ... [more]
AB1G_ARATH1.933e-6256.50ABC transporter G family member 1 OS=Arabidopsis t... [more]
AB6G_ARATH3.298e-6260.71ABC transporter G family member 6 OS=Arabidopsis t... [more]
AB18G_ARATH1.637e-6159.01ABC transporter G family member 18 OS=Arabidopsis ... [more]
AB17G_ARATH1.637e-6159.01ABC transporter G family member 17 OS=Arabidopsis ... [more]
AB19G_ARATH9.929e-5958.06ABC transporter G family member 19 OS=Arabidopsis ... [more]
AB9G_ARATH1.144e-3035.25ABC transporter G family member 9 OS=Arabidopsis t... [more]
AB21G_ARATH7.415e-3036.57ABC transporter G family member 21 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877834 ID=FC877834; Name=FC877834; organism=Citrus clementina; type=EST; length=923bp
CCTGCTACTTTGCATTATTAGCACTATCATTTTCCGCTGGCAAAAAATCC
AACTATGTCGCCGGCTTCTGCCGACGACAACCCTTTGCTCTTCATCAATC
AGAAACCAAATGTAGAGCTTCAAAACCAAAATCGAAGTCGCAGATTCACA
GGCTCCTCTGGCAGGTCCATCAACAAAGAGCTTGAAAGTGAGCCGATTAA
CGATTACTCTTCAGTCATCAGCATCGACATGCCGTATTCTAATGGTAGCA
GCAGTAACGAACTACCTAACTACCCATTACTTCTTTCATTCAACAACTTA
TCCTACAGTGTTAAAGTTGGTCAAAAATTGCTTCCGGATCTTCCATTTTT
TGGCTCACAAGATGATGTTAAGAAGACAAAGCTTTTACTGGATGATATTT
CTGGGGTAGCTAGAGAAGGTGAAATAACTGCGATTCTTGGTGCTAGTGGC
TCTAGTAAAACTACTTTGATGGACGCTATTGCTGGCCGCATATCAAAACA
GAGATTGAAAGGCACTGTGACATTGAATGGAGAGGTTTTGGGGTCAAAGC
TTTTGAAGATCATATCTGCTTATGTGATGCAAGATGATCTTTTGTATTCC
ATGCTAACCATAGAGGAAACCCTTATGTTCTCAGCGGAATTTAGGCTTCC
TCGATCTTTATCTAAAGAAAAAAAGCGAAAAAGAGTGGATGCTTTGATTG
ATCAACTCGGTCTTCGAAGTGCAGCCATGACCATAATTGGTGATGAGCAA
CACAGAGGTGTTTCAGGAGGCGAGCGCAGGCGGGTTTCTATCGGAGTTGA
TATAATTCATGATCCAATTCTCTTGTTCCTGGACGAACCCATATCAGGGC
TTGATTTCACAAGCGCGTTTAATGTTGTCAAGGTGTTAAAACAGATTGCA
AAAAGTGGAAGCATTGTCATCAT
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