FC877837
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2) HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48 Identity = 107/214 (50.00%), Postives = 133/214 (62.15%), Query Frame = 3 Query: 177 DHGVVNFLFLFLYLHA----LPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQ 803 DHG + L LFL L + +V Q D S +F+ TMAI+ ++LVSVFF LGFFSVYIR+C ER G +R+ ARGLD S+I TFPTF YS V+ L+IGK +LEC+VCLNEF D+ETLRLIPKC HVFH CIDAWL +H TCP+CRA+L+P PGE+ S IP L D S + D I+ + S D + Sbjct: 18 DHGSILQLLLFLLLLSSHGGFKFVAGQATHGGSDV-SGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGS--DPNGDRIRSLGSPDAR 228
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2) HSP 1 Score: 167.933 bits (424), Expect = 6.197e-41 Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = 3 Query: 288 KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPS 710 + + MA++ VIL++ F +GFFS+Y R C+ PDA + GG R+ ARGLD SV+ TFPTFLYS V+ K+GKG LECA+CLNEF D+ETLRL+PKC HVFH CIDAWL AH TCPVCRANL Q E S Sbjct: 44 RLSPAMAVIVVILIAALFFMGFFSIYFRHCS----GVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGES 182
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.246e-40 Identity = 87/161 (54.04%), Postives = 107/161 (66.46%), Query Frame = 3 Query: 291 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDN 773 F+ T AI+ ++LVSVFF LG SVY+R+C + D+ +N R GLD SVI TFPTF YS V+ L+IGK +LEC VCLNEF D+ETLRLIP+C HVFH CIDAWL + TCP+CRANLVP PGE+ SS IP L + G + L D+ Sbjct: 35 FSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGM-DSGGGPGNWLNVRQTTEP-GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLRTPIDD 193
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2) HSP 1 Score: 158.303 bits (399), Expect = 4.910e-38 Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 3 Query: 264 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRG--ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 701 D ++ +G + MA+V V++++ F +GFF+VYIR CT + D T GG +R ARGLD I TFPTF+YS V+ KIGKG+LECA+CLNEF D+ETLRL+PKC HVFH CI AWL H TCPVCR NL Q E Sbjct: 33 DPYAYSG-SLSPAMAVVVVVVIAALFFMGFFTVYIRHCT----GAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPE 175
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 2.522e-34 Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 3 Query: 183 GVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR--SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQ 761 GV+ LFLF H LPYVT Q ++ T + +I+ ++++++F LG S + R IG Q R RGL+ VI +FPTFLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCPVCRANL +PGE+ P LN DV + +++ Sbjct: 15 GVILPLFLF---HLLPYVTCQQESVPTNSIRQTNLSAD---SIIAIVVLAIFISLGMVSCCLHCIFYREE---------IGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGES----YPYLNMDVETGGVQK 190
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 4.301e-34 Identity = 80/173 (46.24%), Postives = 104/173 (60.12%), Query Frame = 3 Query: 309 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA--TIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNP-DVGSSRLEQGSDNIQEISSTDVQRRD 812 + VI+ + F L F + C + SP + T GG + + RR +RGL VIN+FP+FLYS V+ LKIGKG +ECA+CLNEF DEETLRL+P CSH FH CID WLS+ +TCPVCRA+L P+PG +S P + P D LE + + S DV+ D Sbjct: 45 VPAVIIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPHDNQDMDLENVTARRSVLESPDVRLLD 217
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 5.618e-34 Identity = 90/208 (43.27%), Postives = 116/208 (55.77%), Query Frame = 3 Query: 195 FLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQ--RSRR-GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQR 806 FL L L L ++PY QT T K N + +V +L V F + F S++ R+ + S +T +Q R RR ARGLD I TFPTFLYS V+ ++IGKG +ECAVCL EF D+ETLRL+P C HVFH DC+D WLS H+TCP+CRA+LV Q G+ D S+ G+D SSTD +R Sbjct: 18 FLLLLLLLQSVPYGFGQTQTTPP---GTTKTKPNDPVVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGD-----------DDDSTESYSGTDPGTISSSTDPER 211
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 1.171e-31 Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 3 Query: 312 VTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGI--NQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP---QPGE 701 V +LV++FF+ G SVYIR C R++PD+ + SRRG GLD++V+ +FP F YS+V+E KIG LECA+CLNE D ET+RL+P C+H+FH+DCID WL +H TCPVCR+NL +PG+ Sbjct: 48 VFAVLVTLFFLTGLLSVYIRHCA---RSNPDSSTRYFRNRANDGSSRRG--GLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGD 177
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.813e-31 Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 3 Query: 204 LFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGR---NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGS 767 LFL +H LPYVT Q D T T ++ +I++++F L + ++ + R S + F + R RGL+ ++ +FP FLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCP CRANL +PGE S P+ + + G+ + ++ S Sbjct: 20 LFL-VHLLPYVTCQQESESVDRNRKTNFP---TETVIAIIVLAIFISLSMVACFLHKTFYRAEVEAASQEVFHS----------RARRGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGE--SYPYPITDLETGNEQRDEHS 194
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.813e-31 Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 3 Query: 300 TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR-SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 701 T+ ++T+IL ++F I+G SV R + + + + R S RGLD+++IN+FPTFLYS V+E +IG G +ECAVC+ EF D ETLRL+P+C HVFH DC+ WLS H+TCP+CR +L QPGE Sbjct: 14 TLLVITIILFAIF-IVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGE 147 The following BLAST results are available for this feature:
BLAST of FC877837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877837 ID=FC877837; Name=FC877837; organism=Citrus clementina; type=EST; length=842bpback to top |