FC877837

Overview
NameFC877837
Unique NameFC877837
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length842
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8446 contig Ccv1_Contig8446:1..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1N_ARATH (RING-H2 finger protein ATL1N OS=Arabidopsis thaliana GN=ATL1N PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 8.927e-48
Identity = 107/214 (50.00%), Postives = 133/214 (62.15%), Query Frame = 3
Query:  177 DHGVVNFLFLFLYLHA----LPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSF-IPVLNPDVGSSRLEQGSDNIQEISSTDVQ 803
            DHG +  L LFL L +      +V  Q      D  S    +F+ TMAI+ ++LVSVFF LGFFSVYIR+C ER            G     +R+ ARGLD S+I TFPTF YS V+ L+IGK +LEC+VCLNEF D+ETLRLIPKC HVFH  CIDAWL +H TCP+CRA+L+P PGE+  S  IP L  D   S  +   D I+ + S D +
Sbjct:   18 DHGSILQLLLFLLLLSSHGGFKFVAGQATHGGSDV-SGDSSRFDPTMAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAGNWLATNRQQARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTTCPLCRADLIPVPGESIVSIQIPGLVNDPPGS--DPNGDRIRSLGSPDAR 228          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL3B_ARATH (RING-H2 finger protein ATL3B OS=Arabidopsis thaliana GN=ATL3B PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 6.197e-41
Identity = 81/143 (56.64%), Postives = 98/143 (68.53%), Query Frame = 3
Query:  288 KFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPS 710
            + +  MA++ VIL++  F +GFFS+Y R C+      PDA  +  GG   R+     ARGLD SV+ TFPTFLYS V+  K+GKG LECA+CLNEF D+ETLRL+PKC HVFH  CIDAWL AH TCPVCRANL  Q  E  S
Sbjct:   44 RLSPAMAVIVVILIAALFFMGFFSIYFRHCS----GVPDAGVSPAGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRANLAEQVAEGES 182          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1C_ARATH (RING-H2 finger protein ATL1C OS=Arabidopsis thaliana GN=ATL1C PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.246e-40
Identity = 87/161 (54.04%), Postives = 107/161 (66.46%), Query Frame = 3
Query:  291 FNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGSDN 773
            F+ T AI+ ++LVSVFF LG  SVY+R+C +      D+       +N R      GLD SVI TFPTF YS V+ L+IGK +LEC VCLNEF D+ETLRLIP+C HVFH  CIDAWL +  TCP+CRANLVP PGE+ SS IP L  + G + L    D+
Sbjct:   35 FSPTTAIIMIVLVSVFFALGCISVYMRRCLQHALGM-DSGGGPGNWLNVRQTTEP-GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFHPGCIDAWLRSQTTCPLCRANLVPVPGESVSSEIPGLARETGQNSLRTPIDD 193          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 4.910e-38
Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 3
Query:  264 DAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQRSRRG--ARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 701
            D ++ +G   +  MA+V V++++  F +GFF+VYIR CT     + D   T  GG  +R      ARGLD   I TFPTF+YS V+  KIGKG+LECA+CLNEF D+ETLRL+PKC HVFH  CI AWL  H TCPVCR NL  Q  E
Sbjct:   33 DPYAYSG-SLSPAMAVVVVVVIAALFFMGFFTVYIRHCT----GAVDGSVTPAGGARRRVTNATVARGLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAEQTPE 175          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.522e-34
Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 3
Query:  183 GVVNFLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR--SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQ 761
            GV+  LFLF   H LPYVT Q      ++   T    +   +I+ ++++++F  LG  S  +     R           IG   Q     R  RGL+  VI +FPTFLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCPVCRANL  +PGE+     P LN DV +  +++
Sbjct:   15 GVILPLFLF---HLLPYVTCQQESVPTNSIRQTNLSAD---SIIAIVVLAIFISLGMVSCCLHCIFYREE---------IGAAGQDVLHSRARRGLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRANLSLKPGES----YPYLNMDVETGGVQK 190          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.301e-34
Identity = 80/173 (46.24%), Postives = 104/173 (60.12%), Query Frame = 3
Query:  309 IVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFA--TIIGGINQRS--RRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNP-DVGSSRLEQGSDNIQEISSTDVQRRD 812
            +  VI+  + F L F  +    C +    SP   +  T  GG  + +  RR +RGL   VIN+FP+FLYS V+ LKIGKG +ECA+CLNEF DEETLRL+P CSH FH  CID WLS+ +TCPVCRA+L P+PG   +S  P + P D     LE  +     + S DV+  D
Sbjct:   45 VPAVIIAMLMFTLLFSMLACCVCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPHDNQDMDLENVTARRSVLESPDVRLLD 217          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.618e-34
Identity = 90/208 (43.27%), Postives = 116/208 (55.77%), Query Frame = 3
Query:  195 FLFLFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQ--RSRR-GARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLV-PQPGETPSSFIPVLNPDVGSSRLEQGSDNIQEISSTDVQR 806
            FL L L L ++PY   QT          T  K N  + +V  +L  V F + F S++ R+   +   S    +T     +Q  R RR  ARGLD   I TFPTFLYS V+ ++IGKG +ECAVCL EF D+ETLRL+P C HVFH DC+D WLS H+TCP+CRA+LV  Q G+           D  S+    G+D     SSTD +R
Sbjct:   18 FLLLLLLLQSVPYGFGQTQTTPP---GTTKTKPNDPVVVVITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLVLNQQGD-----------DDDSTESYSGTDPGTISSSTDPER 211          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL4O_ARATH (RING-H2 finger protein ATL4O OS=Arabidopsis thaliana GN=ATL4O PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.171e-31
Identity = 68/135 (50.37%), Postives = 92/135 (68.15%), Query Frame = 3
Query:  312 VTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGI--NQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVP---QPGE 701
            V  +LV++FF+ G  SVYIR C    R++PD+          +  SRRG  GLD++V+ +FP F YS+V+E KIG   LECA+CLNE  D ET+RL+P C+H+FH+DCID WL +H TCPVCR+NL     +PG+
Sbjct:   48 VFAVLVTLFFLTGLLSVYIRHCA---RSNPDSSTRYFRNRANDGSSRRG--GLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNLTAKSNKPGD 177          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.813e-31
Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 3
Query:  204 LFLYLHALPYVTAQTXXXXXDAFSVTGPKFNGTMAIVTVILVSVFFILGFFSVYIRQCTERGR---NSPDAFATIIGGINQRSRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGETPSSFIPVLNPDVGSSRLEQGS 767
            LFL +H LPYVT Q      D    T      T  ++ +I++++F  L   + ++ +   R      S + F +          R  RGL+  ++ +FP FLYS V+ LKIGKG +ECA+CL+EF D+ETLR +P CSH FH +CID WLS+ +TCP CRANL  +PGE  S   P+ + + G+ + ++ S
Sbjct:   20 LFL-VHLLPYVTCQQESESVDRNRKTNFP---TETVIAIIVLAIFISLSMVACFLHKTFYRAEVEAASQEVFHS----------RARRGLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKPGE--SYPYPITDLETGNEQRDEHS 194          
BLAST of FC877837 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.813e-31
Identity = 65/135 (48.15%), Postives = 90/135 (66.67%), Query Frame = 3
Query:  300 TMAIVTVILVSVFFILGFFSVYIRQCTERGRNSPDAFATIIGGINQR-SRRGARGLDDSVINTFPTFLYSAVRELKIGKGSLECAVCLNEFGDEETLRLIPKCSHVFHMDCIDAWLSAHNTCPVCRANLVPQPGE 701
            T+ ++T+IL ++F I+G  SV  R  + +  +           +  R S    RGLD+++IN+FPTFLYS V+E +IG G +ECAVC+ EF D ETLRL+P+C HVFH DC+  WLS H+TCP+CR +L  QPGE
Sbjct:   14 TLLVITIILFAIF-IVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCRVDLCLQPGE 147          
The following BLAST results are available for this feature:
BLAST of FC877837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
ATL1N_ARATH8.927e-4850.00RING-H2 finger protein ATL1N OS=Arabidopsis thalia... [more]
ATL3B_ARATH6.197e-4156.64RING-H2 finger protein ATL3B OS=Arabidopsis thalia... [more]
ATL1C_ARATH5.246e-4054.04RING-H2 finger protein ATL1C OS=Arabidopsis thalia... [more]
ATL5H_ARATH4.910e-3852.70RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL4C_ARATH2.522e-3443.08Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL1H_ARATH4.301e-3446.24RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]
ATL2G_ARATH5.618e-3443.27RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL4O_ARATH1.171e-3150.37RING-H2 finger protein ATL4O OS=Arabidopsis thalia... [more]
ATL4B_ARATH5.813e-3139.27Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]
ATL2F_ARATH5.813e-3148.15RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CF06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877837 ID=FC877837; Name=FC877837; organism=Citrus clementina; type=EST; length=842bp
ATTTTTTTTTCTTACGTTTTTCCGTATGCTTTTGCTTTGTCTTAGAAACA
AATCTTCAGAGCTCCGAGCAAAAGAACCACTCATGATCATGAACAACAAC
TACAATTACTTTACTTGAAGTGATGACTGTTCTAACGCCTAATCCGAGCC
GTTCAATTTTCAATCCTATGATATGCGATCATGGCGTGGTCAACTTTCTT
TTTCTCTTTCTCTATCTCCACGCCTTACCGTATGTCACCGCACAAACTCC
ACCGCCGCCACCGGACGCGTTTTCTGTTACGGGGCCGAAATTCAACGGTA
CTATGGCCATAGTAACCGTAATATTGGTCAGCGTTTTCTTCATCTTGGGC
TTCTTCTCCGTTTACATCCGTCAGTGCACTGAAAGGGGCCGAAACAGCCC
TGACGCTTTTGCTACTATAATTGGAGGGATCAACCAACGGTCCCGCAGAG
GGGCGCGCGGGCTTGACGATTCTGTTATCAACACTTTTCCCACCTTCCTC
TACTCGGCGGTCAGAGAGCTTAAAATCGGCAAGGGTTCTTTAGAATGCGC
GGTTTGCTTGAACGAGTTTGGAGATGAGGAAACGCTGCGTTTGATACCAA
AGTGTAGCCACGTGTTTCACATGGATTGCATCGACGCTTGGTTGTCTGCT
CATAACACGTGTCCCGTCTGCCGCGCAAATTTGGTGCCACAACCTGGCGA
AACTCCCTCCAGCTTCATTCCAGTTCTTAACCCGGATGTTGGCTCGAGTC
GATTGGAACAAGGTTCAGATAATATTCAAGAGATTTCATCGACTGATGTG
CAGAGGAGAGATGAAGAAGCTCCTGACGTGATCCTGACCAAT
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