FC877859
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 199.519 bits (506), Expect = 1.631e-50 Identity = 116/217 (53.46%), Postives = 134/217 (61.75%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLXXXXXXXXXXXXXXXAPANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESXXXXXXXXXXXXXXXXXVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 757 MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLEEN V ENSF+ V++ APA S S +DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+NNPERAVEYLYSGIP Q +PPV Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFI-VIMLSKTKASPSGASTASAPA----------------PSATQPQTVATPQVSAPTASVPVPTSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQAEIPPV 199
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 2.204e-47 Identity = 107/215 (49.77%), Postives = 126/215 (58.60%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLXXXXXXXXXXXXXXXAPANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESXXXXXXXXXXXXXXXXXVSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 751 MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+ENKV ENSF+V+ML AP+N + VSS +D YGQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+NNPERAVEYLYSG+PEQ +P Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPATTVPVTVSAPTPTATASPAPAVA--------VSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAFNNPERAVEYLYSGVPEQMDIP 207
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 131.724 bits (330), Expect = 4.176e-30 Identity = 62/74 (83.78%), Postives = 71/74 (95.95%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328 MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+EENKVAENSF+V+M+ Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMM 74 HSP 2 Score: 124.79 bits (312), Expect = 5.105e-28 Identity = 59/72 (81.94%), Postives = 65/72 (90.28%), Query Frame = 2 Query: 542 VSSVSDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVPPV 757 V S DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+NNPERAVEYLY+GIPEQ VPPV Sbjct: 167 VGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGIPEQAEVPPV 238
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.899e-23 Identity = 50/66 (75.76%), Postives = 58/66 (87.88%), Query Frame = 2 Query: 554 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPEQTAVP 751 SD YGQAAS LV+GS++E VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIPE +P Sbjct: 130 SDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPETVTIP 195 HSP 2 Score: 97.0561 bits (240), Expect = 1.140e-19 Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328 MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL ENKV E F+VVML Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVML 74
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 105.531 bits (262), Expect = 3.205e-22 Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 2 Query: 554 SDVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAYNNPERAVEYLYSGIPE--QTAVP 751 +D YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAYNNPERAV+YLYSGIP+ + AVP Sbjct: 132 TDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGIPQTAEVAVP 199 HSP 2 Score: 98.2117 bits (243), Expect = 5.117e-20 Identity = 49/74 (66.22%), Postives = 55/74 (74.32%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328 MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L ENKV E F+VVML Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVML 74
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328 M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+ Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMV 74
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328 M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+ Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMV 74
BLAST of FC877859 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11 Identity = 33/74 (44.59%), Postives = 52/74 (70.27%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVML 328 M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+ Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMV 74 The following BLAST results are available for this feature:
BLAST of FC877859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877859 ID=FC877859; Name=FC877859; organism=Citrus clementina; type=EST; length=759bpback to top |