FC877872

Overview
NameFC877872
Unique NameFC877872
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13048 contig Ccv1_Contig13048:34..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_SCHPO (Eukaryotic translation initiation factor 2 subunit alpha OS=Schizosaccharomyces pombe GN=tif211 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.074e-50
Identity = 95/154 (61.69%), Postives = 115/154 (74.68%), Query Frame = 1
Query:  124 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLNSL 585
            CRMYE R+PEVD  V++ V+ I +MGAYV LLEY+NIEGM+L SE             +VGR E V+VLRVDKEKGYIDLSKRRVS ED+  CEER+NKSK VHSIMRH+AE   + LE +Y  IGWPLYRKYGHA++AFK+ +++PD V   L
Sbjct:    6 CRMYENRFPEVDELVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDVVKCEERFNKSKAVHSIMRHIAEKHNVPLETMYTTIGWPLYRKYGHAYDAFKLAISNPDHVFEGL 159          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_PONAB (Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo abelii GN=EIF2S1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 9.805e-48
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 627
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNERVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          

HSP 2 Score: 53.5286 bits (127), Expect = 9.805e-48
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  725 EEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMR 856
            E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R
Sbjct:  170 EDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALR 213          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_RAT (Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus norvegicus GN=Eif2s1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.278e-47
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 627
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          

HSP 2 Score: 53.5286 bits (127), Expect = 1.278e-47
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  725 EEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMR 856
            E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R
Sbjct:  170 EDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALR 213          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_MOUSE (Eukaryotic translation initiation factor 2 subunit 1 OS=Mus musculus GN=Eif2s1 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 1.278e-47
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 627
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          

HSP 2 Score: 53.5286 bits (127), Expect = 1.278e-47
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  725 EEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMR 856
            E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R
Sbjct:  170 EDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALR 213          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_HUMAN (Eukaryotic translation initiation factor 2 subunit 1 OS=Homo sapiens GN=EIF2S1 PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 1.278e-47
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 627
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          

HSP 2 Score: 53.5286 bits (127), Expect = 1.278e-47
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  725 EEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMR 856
            E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R
Sbjct:  170 EDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALR 213          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_BOVIN (Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.278e-47
Identity = 90/180 (50.00%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPLYRKYGH----AFEAFKIIVTDPDSVLNSLTREVKEIGPDGQEV 627
            P L CR Y+ ++PEV+  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDKEKGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE L+    W    KY      A++AFK  V+DP S+L+SL     ++  D +EV
Sbjct:    2 PGLSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEEAIKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAVSDP-SILDSL-----DLNEDEREV 175          

HSP 2 Score: 53.5286 bits (127), Expect = 1.278e-47
Identity = 21/44 (47.73%), Postives = 35/44 (79.55%), Query Frame = 2
Query:  725 EEVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMR 856
            E+ ++ L+ NI RR+TPQ +KIRADIE+ C+ ++G+  +K+A+R
Sbjct:  170 EDEREVLINNINRRLTPQAVKIRADIEVACYGYEGIDAVKEALR 213          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_DROME (Eukaryotic translation initiation factor 2 subunit 1 OS=Drosophila melanogaster GN=eIF-2alpha PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.360e-45
Identity = 87/172 (50.58%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  118 LECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGID----LEELYVNIGWPLYRKYGH---AFEAFKIIVTDPDSVLN--SLTREVKEI 606
            L  R Y  RYPE++  VM+ V +IA+MGAYV LLEYNNIEGMIL SE             +VG+ EPV+V+RVDKEKGYIDLSKRRVS ED++ C ER+ K+K ++S++RHVA+ LG +    LE+LY    W   +KY +   A++ FK  VTDP +V +  +L  E KE+
Sbjct:    3 LTSRFYNERYPEIEDVVMVNVLSIAEMGAYVHLLEYNNIEGMILLSELSRRRIRSINKLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSPEDVEKCTERFAKAKAINSLLRHVADILGFEGNEKLEDLYQKTAWHFEKKYNNKTVAYDIFKQSVTDP-TVFDECNLEPETKEV 173          

HSP 2 Score: 42.743 bits (99), Expect = 7.360e-45
Identity = 17/44 (38.64%), Postives = 30/44 (68.18%), Query Frame = 2
Query:  728 EVKDALVKNIRRRMTPQPLKIRADIEMKCFQFDGVLHIKDAMRK 859
            E K+ L+ NI+R++    +KIRADIE  C+ ++G+  +K ++ K
Sbjct:  169 ETKEVLLSNIKRKLVSPTVKIRADIECSCYGYEGIDAVKASLTK 212          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_YEAST (Eukaryotic translation initiation factor 2 subunit alpha OS=Saccharomyces cerevisiae GN=SUI2 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.302e-44
Identity = 89/146 (60.96%), Postives = 106/146 (72.60%), Query Frame = 1
Query:  124 CRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGIDLEELYVNIGWPLYRKYGHAFEAFKIIVTD 561
            CR YE +YPE+D  VM+ V+ IA+MGAYV LLEY+NIEGMIL SE             +VG+ +  +VLRVDKEKGYIDLSKRRVS EDI  CEE+Y KSK VHSI+R+ AE   I LEELY  I WPL RK+GHA+EAFK+ + D
Sbjct:    6 CRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKYQKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIID 151          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_DICDI (Eukaryotic translation initiation factor 2 subunit 1 OS=Dictyostelium discoideum GN=eif2s1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.715e-42
Identity = 86/158 (54.43%), Postives = 111/158 (70.25%), Query Frame = 1
Query:  121 ECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLG-----IDLEELYVNIGWPLYRKYGHAFEAFKIIVTDPDSVLN 579
            +CRMYE +YPE +  VM+++++I DMG YVSLLEYNNIEGMIL SE             +VG+ E V+V+RVDK+KGYIDLSKRRV+ E+   CEER++KSK VH I+R+VA  L      +  + LY    WPLY KYGHA+EAFK+ +T+P SV N
Sbjct:    6 DCRMYEKKYPEENELVMVRIESIGDMGVYVSLLEYNNIEGMILLSEISRRRIRSINKLVRVGKTEAVVVVRVDKDKGYIDLSKRRVTPEEYAQCEERFHKSKAVHGIVRYVATKLSTEDNVVKTKHLYTKFVWPLYTKYGHAYEAFKLSITEP-SVFN 162          
BLAST of FC877872 vs. ExPASy Swiss-Prot
Match: IF2A_XENTR (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.395e-38
Identity = 89/166 (53.61%), Postives = 113/166 (68.07%), Query Frame = 1
Query:  112 PNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETLGI----DLEELYVNIGWPL---YRKYGH-AFEAFKIIVTDPDSVLNSL 585
            P L CR Y+ ++PEVD  VM+ V++IA+MGAYVSLLEYNNIEGMIL SE             ++GR E V+V+RVDK+KGYIDLSKRRVS E+   CE+++ KSK V+SI+RHVAE L       LE LY    W     Y+K G+ A++AFK  V+DPD VL+ L
Sbjct:    2 PALSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKDKGYIDLSKRRVSPEEALKCEDKFTKSKTVYSILRHVAEVLEYTKDEQLESLYQRTAWVFDEKYKKPGYGAYDAFKHAVSDPD-VLDGL 166          
The following BLAST results are available for this feature:
BLAST of FC877872 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
IF2A_SCHPO2.074e-5061.69Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_PONAB9.805e-4850.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_RAT1.278e-4750.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_MOUSE1.278e-4750.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_HUMAN1.278e-4750.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_BOVIN1.278e-4750.00Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DROME7.360e-4550.58Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_YEAST1.302e-4460.96Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_DICDI2.715e-4254.43Eukaryotic translation initiation factor 2 subunit... [more]
IF2A_XENTR1.395e-3853.61Eukaryotic translation initiation factor 2 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877872 ID=FC877872; Name=FC877872; organism=Citrus clementina; type=EST; length=879bp
CTCTCCGGTTGTCTTAAAACCCTAATTCTTGTTCCCACTCCCTTCGAATT
TTCCCGAGAAAACGCAAAAGCTAAAAAGCTTTCCGAGCAACCAATCATGG
CAAGCCACTCGCCCAACCTGGAGTGCCGGATGTACGAGGCGAGGTACCCG
GAAGTCGACATGGCCGTGATGATCCAAGTGAAGAACATCGCCGACATGGG
CGCCTACGTGTCGCTGCTCGAGTACAACAACATCGAAGGGATGATCCTTT
TCTCGGAGCTCTCGCGACGTCGTATTCGTAGTGTCAGTAGCCTCATTAAA
GTCGGCCGCATCGAGCCCGTCATGGTCCTGCGTGTCGACAAGGAAAAAGG
TTACATTGATTTGAGTAAAAGAAGAGTTAGTGAAGAGGATATTCAAGCCT
GTGAGGAGAGGTACAACAAGAGCAAGCTCGTTCACTCTATCATGCGACAC
GTGGCTGAGACTTTGGGCATCGATTTAGAGGAACTGTATGTCAATATTGG
CTGGCCCTTGTACCGGAAATATGGTCATGCTTTTGAGGCATTCAAAATCA
TTGTTACTGATCCTGATTCTGTTTTGAATTCCCTCACTCGTGAAGTCAAA
GAAATTGGCCCTGATGGACAGGAGGTAAACTTTGTTTGGTAGGGTTTTTG
TCTCGTTCTCTTCATTGATTACTCAGGTCATCGTTGTCCCATTCTAGGTA
ACTAAGGTGGTTCCTGCTGTGACGGAGGAAGTGAAAGATGCTTTGGTAAA
AAATATTAGGAGAAGAATGACCCCACAGCCATTGAAGATTCGAGCTGACA
TTGAAATGAAATGCTTCCAGTTTGATGGAGTTCTTCATATTAAGGATGCC
ATGCGGAAAGCTGAGGCTGCTGGCAACAA
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