FC877877
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877877 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.245e-30 Identity = 80/194 (41.24%), Postives = 108/194 (55.67%), Query Frame = 1 Query: 139 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 720 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN G +++SAE+LDA LD Y Sbjct: 67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMT----RNRGVLGGFGGGGNRRGTRGGNRGRGRGAGRTSKQQLSAEELDAQLDAY 247
BLAST of FC877877 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.626e-30 Identity = 80/194 (41.24%), Postives = 108/194 (55.67%), Query Frame = 1 Query: 139 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 720 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA +VN G +++SAE+LDA LD Y Sbjct: 70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMT----RNRGSGGFGGGGGTRRGTRGGSRGRGRGTGRSSKQQLSAEELDAQLDAY 250
BLAST of FC877877 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 2.124e-30 Identity = 79/194 (40.72%), Postives = 108/194 (55.67%), Query Frame = 1 Query: 139 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 720 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+ PA ++N G +++SAE+LDA LD Y Sbjct: 69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRGGMT-----RNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNSKQQLSAEELDAQLDAY 248
BLAST of FC877877 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.774e-30 Identity = 87/236 (36.86%), Postives = 117/236 (49.58%), Query Frame = 1 Query: 13 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 720 M+ +DMSLDDIIK N+ G NR APY+ K WQHD+F G +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y V LDG+PM I++V + I + PA + GN G+ +++SAE+LDA LD Y Sbjct: 1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQS---GNRGGM---------TRSRGSGGFGGRGSQGRGRGTGRNSKQQQLSAEELDAQLDAY 211
BLAST of FC877877 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3) HSP 1 Score: 131.339 bits (329), Expect = 6.179e-30 Identity = 79/194 (40.72%), Postives = 107/194 (55.15%), Query Frame = 1 Query: 139 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEKISAEDLDADLDKY 720 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I + PA +VN G +++SAE+LDA LD Y Sbjct: 70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRGGMT----RNRGAGGFGGGGGTRRGTRGGARGRGRGAGRNSKQQLSAEELDAQLDAY 250
BLAST of FC877877 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.165e-28 Identity = 65/124 (52.42%), Postives = 87/124 (70.16%), Query Frame = 1 Query: 139 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 510 G NR APY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I Sbjct: 73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 188
BLAST of FC877877 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.391e-28 Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 1 Query: 139 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 510 G NR PY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I Sbjct: 70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQI 185
BLAST of FC877877 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.198e-27 Identity = 63/124 (50.81%), Postives = 85/124 (68.55%), Query Frame = 1 Query: 139 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNTVQLDGKPMKIEIVGTNI 510 G NR PY+ K WQHD+F S F G + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I Sbjct: 69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQI 184 The following BLAST results are available for this feature:
BLAST of FC877877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877877 ID=FC877877; Name=FC877877; organism=Citrus clementina; type=EST; length=818bpback to top |