FC877910

Overview
NameFC877910
Unique NameFC877910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length819
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10225 contig Ccv1_Contig10225:1351..2170. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 3.680e-91
Identity = 181/268 (67.54%), Postives = 199/268 (74.25%), Query Frame = 3
Query:   54 SFLQAPMAALVPSTSVHS------LRSKSTRSLKTF-------CSAKIPNPMPAHINPNDPFLSKLXXXXXXSPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSATYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            S LQA M +L+P +S  S        S   R+LKTF        SAKIP P    INP DPFLS L      SPE  +NRP N+   PYLDI+DSP LM+SPAQVERS  YNEHR              GRIVYIGMPLVPAVTELVVAELMYLQW+DPK PIY+YINSTGTTRDDGE+VGMESEGFAIYD+LMQ+K EVHTV VGAAIG ACLLL+AGTKGKRFMMPHAK MIQQPR+PSSGL+PASDVLIRAKE + NRD LV+LL
Sbjct:    3 SCLQASMNSLLPRSSSFSPHPPLSSNSSGRRNLKTFRYAFRAKASAKIPMPP---INPKDPFLSTLASIAANSPEKLLNRPVNADVPPYLDIFDSPQLMSSPAQVERSVAYNEHRPRTPPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRDILVELL 267          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.509e-31
Identity = 70/148 (47.30%), Postives = 102/148 (68.92%), Query Frame = 3
Query:  405 RIVYIGMPLVPA----------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIVY+GMPL  +          VT+L++A+L+YLQ+ DP  PIY YINSTGT+   G++VG E+E FAI DTL  +K  VHT+ +G A+G A ++L++GTKG R  +PHA I++ Q R  + G   A+D+ IRAKE + N+ T++++L
Sbjct:   31 RIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYRASLPHATIVLNQNRTGAQG--QATDIQIRAKEVISNKQTMLEIL 176          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.589e-31
Identity = 66/147 (44.90%), Postives = 101/147 (68.71%), Query Frame = 3
Query:  405 RIVYIGMPLVPA----------VTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKL 815
            RI+Y+GMPL  +          VTEL++A+L+YL++ +P+ PIY YINSTGT+   G+++G E+E FAI DT+  +K  VHT+ +G A+G A ++L+ GT G R  +PHA I++ QPR  + G   ASD+ IRAKE + N+ T++++
Sbjct:   33 RIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPRTGAQG--QASDIQIRAKEVLANKRTMLEI 177          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.832e-29
Identity = 98/264 (37.12%), Postives = 138/264 (52.27%), Query Frame = 3
Query:   42 AMSTSF--LQAPMAALVPSTSVHSLRSK----STRSLKTFCSAKIPNPMPAHINPNDPFLSKLXXXXXXSPEAFVNRPSNSGTLPYLDIYDSPTLMASPAQVERSATYNEHRXXXXXXXXXXXXXHGRIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKL 815
            A +TSF  L+A  +A++PS S  +LRSK    S+ SL+   S    +P       +D   +KL      +P  F +     G +  +  +   +    P     S  +                   RIVY+GM LVP+VTEL++AE +YLQ+ D + PIYLYINSTGTT+ +GE +G ++E FAIYD +  +K  + T+ VG A G A LLL AG KG R  +P + IMI+QP     G   A+DV I  KE    +  +VKL
Sbjct:    6 ATATSFTTLRARTSAIIPS-STRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSDLCGAKLRAESL-NPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKN-----------------RIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTK-NGEKLGYDTEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQG--QATDVEIARKEIKHIKTEMVKL 247          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.896e-27
Identity = 65/139 (46.76%), Postives = 92/139 (66.19%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRL-PSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI Y+GMP+VPAVTEL+VA+ M+L + +P  PIYLYINS GT  +  E+VG E+E +AI DT+   K +V+T+  G A G A +LL+ G KG R + PH+   +  P++  SSG   A D+ I+AKE   N +  ++LL
Sbjct:  180 RICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSG--AAIDMWIKAKELDANTEYYIELL 316          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I  +E +  +D L ++L
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEIITRELLRIKDLLNRIL 163          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I  +E +  +D L ++L
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEIITRELLRIKDLLNRIL 163          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.741e-24
Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RIV++G P+   V  LV+A+L++L+  DP   +YLYINS G         G  + G AIYDT+  +KC+V T+ VG A  MA +LLAAG KGKR+ +P+A+IMI QP   + G  PA DV I  +E +  +D L ++L
Sbjct:   37 RIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG---------GSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEG--PAKDVEIITRELLRIKDLLNRIL 163          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP_THEYD (ATP-dependent Clp protease proteolytic subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=clpP PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.879e-24
Identity = 62/138 (44.93%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI++IG  +   V  +V+A+L++LQ  DP+  I++YINS G         GM S G AIYDT+  +K ++ T  +G A  MAC+LLAAGTKGKRF +PH+++MI QP     G   A+DV I AKE +  +D L  +L
Sbjct:   28 RIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG---------GMVSSGLAIYDTMQYVKPDIATYCIGQASSMACVLLAAGTKGKRFALPHSRVMIHQPIGGFYG--QATDVEIHAKEILKMKDLLNNIL 154          
BLAST of FC877910 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNJB (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. GN=clpP2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.555e-23
Identity = 58/138 (42.03%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  405 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLL 818
            RI+++G  +   +  L+VA+++YL+  DP+  IYLYINS G         G    G AIYDT+  ++ +V T+ +G A  M   LLA GTKGKR  +PHA+IMI QP   + G  PA+D+ I+AKE +  +++L  LL
Sbjct:   26 RIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPG---------GSVYAGMAIYDTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIALPHARIMIHQPLGGAQG--PATDIEIQAKEILFIKNSLNSLL 152          
The following BLAST results are available for this feature:
BLAST of FC877910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPR3_ARATH3.680e-9167.54ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR_SYNY32.509e-3147.30Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR_SYNE75.589e-3144.90Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR4_ARATH6.832e-2937.12ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR1_ARATH4.896e-2746.76ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP_THESQ1.741e-2444.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP11.741e-2444.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA1.741e-2444.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEYD3.879e-2444.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_SYNJB9.555e-2342.03ATP-dependent Clp protease proteolytic subunit 2 O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA22DG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877910 ID=FC877910; Name=FC877910; organism=Citrus clementina; type=EST; length=819bp
CAGAACTCACCAATTTAATTAGAAATAAACAAAAATAAAAAGCCATGTCG
ACGAGTTTCCTGCAAGCACCCATGGCGGCTTTAGTCCCGTCAACTTCAGT
TCACTCTCTTAGAAGCAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAG
CTAAAATTCCCAATCCCATGCCAGCACACATTAATCCTAACGACCCCTTT
CTTTCTAAACTCGCCGCTGCCGCGGCAGCCTCTCCGGAAGCGTTTGTCAA
TCGTCCTTCCAATTCCGGTACGCTGCCGTATTTGGATATCTACGATTCTC
CCACTCTTATGGCCTCCCCTGCCCAAGTGGAAAGATCGGCTACATACAAT
GAACATAGGCCAGATACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCA
TGGGAGGATTGTATACATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGC
TTGTTGTGGCAGAACTGATGTACTTGCAGTGGATGGATCCCAAGGCACCT
ATATATCTTTATATTAATTCCACGGGTACGACTCGTGATGATGGTGAATC
GGTTGGGATGGAGAGTGAAGGCTTTGCCATTTATGATACATTGATGCAAA
TGAAGTGTGAGGTACATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCT
TGTCTACTACTTGCTGCTGGAACTAAAGGAAAACGGTTTATGATGCCTCA
TGCCAAAATCATGATTCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGC
CCGCTAGTGATGTTCTTATTCGTGCAAAAGAGGCAATGGTAAACAGAGAC
ACACTTGTNAAACTTCTGG
back to top