FC877912
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4B_SCHPO (60S ribosomal protein L4-B OS=Schizosaccharomyces pombe GN=rpl4b PE=2 SV=1) HSP 1 Score: 315.079 bits (806), Expect = 8.937e-88 Identity = 161/255 (63.14%), Postives = 185/255 (72.55%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RPTV+I DG+ S T LP VFKAPIR D+V+ VHT +AKNKRQPYAV+E AGHQTSAESWGTGRA+ARIPRV GGGTHR+GQAAFGN CRSGRMFAPTK WRKWH K+N +KR+A RGHR+ IPEVPLVV A + +KT + DV KV +SRKLRAGKGKLRNRRHVQRRGPLVV++ + +++AFRNIPGVE +V LNLLQLAPGGHLGRFVIW Sbjct: 4 ARPTVSIYNKDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAV---QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFN---EDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIW 252 HSP 2 Score: 30.8018 bits (68), Expect = 8.937e-88 Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 1 Query: 835 NAFAALDSVYGSTTEPSELKR 897 +AF LDSV+GSTTE ++LK+ Sbjct: 255 SAFGLLDSVFGSTTEVAQLKK 275
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4A_SCHPO (60S ribosomal protein L4-A OS=Schizosaccharomyces pombe GN=rpl4a PE=1 SV=2) HSP 1 Score: 314.694 bits (805), Expect = 8.937e-88 Identity = 161/255 (63.14%), Postives = 185/255 (72.55%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RPTV+I DG+ S T LP VFKAPIR D+V+ VHT +AKNKRQPYAV+E AGHQTSAESWGTGRA+ARIPRV GGGTHR+GQAAFGN CRSGRMFAPTK WRKWH K+N +KR+A RGHR+ IPEVPLVV A + +KT + DV KV +SRKLRAGKGKLRNRRHVQRRGPLVV++ + +++AFRNIPGVE +V LNLLQLAPGGHLGRFVIW Sbjct: 4 ARPTVSIYSKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAV---QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFN---EDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIW 252 HSP 2 Score: 31.187 bits (69), Expect = 8.937e-88 Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 1 Query: 835 NAFAALDSVYGSTTEPSELKR 897 +AF LDSV+GSTTE ++LK+ Sbjct: 255 SAFGLLDSVFGSTTEAAQLKK 275
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2) HSP 1 Score: 288.115 bits (736), Expect = 1.525e-78 Identity = 144/258 (55.81%), Postives = 181/258 (70.16%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQN---THPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP VT+ G DG S + T LP+V AP+R DIV VH ++ N RQPYAV++ AGHQTSAESWGTGRAV+RIPRV GGGTHRAGQAAFGN CR GRMFAPTK+WR+WH+++N+ KR A V RGH++ +PE+PLVVS +A A++KTS D EK K+S +R GKGK+RNRR++ R+GPLVV+ +G ++++AFRN+PGVE C V LNLL+LAPGGHLGRFVIW Sbjct: 7 ARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSA---EAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVF--GTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIW 259 HSP 2 Score: 26.9498 bits (58), Expect = 1.525e-78 Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 1 Query: 835 NAFAALDSVYGSTTEPSELKR 897 +AF L+S+YGS +PSE K+ Sbjct: 262 SAFEKLESIYGSFEKPSEKKK 282
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1) HSP 1 Score: 287.345 bits (734), Expect = 2.595e-78 Identity = 145/258 (56.20%), Postives = 180/258 (69.77%), Query Frame = 2 Query: 65 SRPTVTIIGADGAAS---QNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP VTI DG S +T LP+V AP+R DIV VH ++ N RQPYAV++ AGHQTSAESWGTGRAV+RIPRV GGGTHRAGQAAFGN CR GRMFAPTK+WR+WH+++N+ KR A V RGH++ +PE+PLVVS +A A++KTS D EK K+S +R GKGK+RNRR++ R+GPLVVY +G ++++AFRN+PGVE C V LNLL+LAPGGHLGRFVIW Sbjct: 6 ARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSA---EAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVY--GTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIW 258 HSP 2 Score: 26.9498 bits (58), Expect = 2.595e-78 Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 1 Query: 835 NAFAALDSVYGSTTEPSELKR 897 +AF L+S+YGS +PSE K+ Sbjct: 261 SAFEKLESIYGSFEKPSEKKK 281
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 2.835e-77 Identity = 141/258 (54.65%), Postives = 181/258 (70.16%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQN---THPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP VT+ +G + + T LP+V KA IR DIV VH+ ++KN RQPYAV++ AGHQTSAESWGTGRAV+RIPRV GGGTHRAGQ AFGN CR GRMFAPTK+WR+WH+KIN+ QKR+A V RGH++ +PE+PLVVS + +++TS D EK KDS +R GKGK+RNRR++ R+GPL+VY +G +L++AFRNIPG++ +V LNLL+LAPGGHLGRFV+W Sbjct: 8 ARPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSI---EGVEETSAALKVLKQIGAYSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVY--GTEGAKLVKAFRNIPGIDIINVERLNLLKLAPGGHLGRFVVW 260 HSP 2 Score: 24.2534 bits (51), Expect = 2.835e-77 Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1 Query: 835 NAFAALDSVYGSTTEPSELK 894 +AF LDS+YGS + SE K Sbjct: 263 SAFEKLDSIYGSFDKVSEKK 282
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4B_YEAST (60S ribosomal protein L4-B OS=Saccharomyces cerevisiae GN=RPL4B PE=1 SV=2) HSP 1 Score: 285.419 bits (729), Expect = 2.972e-76 Identity = 150/256 (58.59%), Postives = 174/256 (67.97%), Query Frame = 2 Query: 62 MSRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 MSRP VT+ G A+ N PLP VF APIR DIV V T + KNKRQ YAV+E AGHQTSAESWGTGRAVARIPRV GGGT R+GQ AFGN CR GRMFAPTK WRKW+ K+N +KR+AT RGHRV IPE+PLVVS+ +++KT + D+ KV S+KLRAGKGK RNRR QRRGPLVVY + +++A RN+PGVE +V +LNLLQLAPG HLGRFVIW Sbjct: 1 MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDL---ESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVY---AEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIW 250
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4A_YEAST (60S ribosomal protein L4-A OS=Saccharomyces cerevisiae GN=RPL4A PE=1 SV=4) HSP 1 Score: 285.419 bits (729), Expect = 2.972e-76 Identity = 150/256 (58.59%), Postives = 174/256 (67.97%), Query Frame = 2 Query: 62 MSRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 MSRP VT+ G A+ N PLP VF APIR DIV V T + KNKRQ YAV+E AGHQTSAESWGTGRAVARIPRV GGGT R+GQ AFGN CR GRMFAPTK WRKW+ K+N +KR+AT RGHRV IPE+PLVVS+ +++KT + D+ KV S+KLRAGKGK RNRR QRRGPLVVY + +++A RN+PGVE +V +LNLLQLAPG HLGRFVIW Sbjct: 1 MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDL---ESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVY---AEDNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIW 250
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4_URECA (60S ribosomal protein L4 OS=Urechis caupo GN=RPL4 PE=2 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 2.516e-75 Identity = 142/255 (55.69%), Postives = 174/255 (68.24%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +T+ GAAS++ LP VF+APIR DIV VH + KN RQPYAV++ AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR RMFAPTK WR+WH+++N Q+R A V +GH + IPEVPLVVS + ++KKT + DVEKVK+SR+ RAGKGKLRNRR +QRRGPL++Y + +AFRNIPG+ +V LNLL +APGGH+GRF IW Sbjct: 3 ARPLITVHSDKGAASESNVTLPAVFRAPIRPDIVNFVHFELKKNGRQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKTWRRWHRRVNTTQRRHALVSAIAATGIPAVVMSKGHCIEQIPEVPLVVSDSV---ESIKKTKEAVVVLRRLKAWPDVEKVKNSRRFRAGKGKLRNRRAIQRRGPLIIYGTDNG---ISRAFRNIPGITLVNVNRLNLLSMAPGGHVGRFCIW 251
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4B_XENLA (60S ribosomal protein L4-B (Fragment) OS=Xenopus laevis GN=rpl4-B PE=2 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 1.249e-74 Identity = 137/255 (53.73%), Postives = 172/255 (67.45%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G S +P VFKAPIR DIV VHT + KN RQPYAV++ AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GHR+ IPEVPLVV + KKT + D++KV S+++RAGKGK+RNRR +QRRGP V+Y+ + +++AFRNIPG+ +V LNLL+LAPGGH+GRF IW Sbjct: 3 ARPLISVYSEKGETSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKV---ESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYN---ENNGIIKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIW 251
BLAST of FC877912 vs. ExPASy Swiss-Prot
Match: RL4A_XENLA (60S ribosomal protein L4-A OS=Xenopus laevis GN=rpl4-A PE=2 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.631e-74 Identity = 137/255 (53.73%), Postives = 173/255 (67.84%), Query Frame = 2 Query: 65 SRPTVTIIGADGAASQNTHPLPNVFKAPIRSDIVQHVHTGMAKNKRQPYAVAENAGHQTSAESWGTGRAVARIPRVSGGGTHRAGQAAFGNQCRSGRMFAPTKVWRKWHQKINLGQKRFATVXXXXXXXXXXXXXXRGHRVGAIPEVPLVVSSAAFADGAMKKTSQXXXXXXXXXXXXDVEKVKDSRKLRAGKGKLRNRRHVQRRGPLVVYDPSKDGKELLQAFRNIPGVECCDVYALNLLQLAPGGHLGRFVIW 829 +RP +++ G +S +P VF+APIR DIV VHT + KN RQPYAV++ AGHQTSAESWGTGRAVARIPRV GGGTHR+GQ AFGN CR GRMFAPTK WR+WH+++N QKR+A +GHR+ IPEVPLVV + KKT + D++KV S+++RAGKGK+RNRR +QRRGP V+Y+ + L++AFRNIPG+ +V LNLL+LAPGGH+GRF IW Sbjct: 8 ARPLISVYSEKGESSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVSKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKV---ESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIYN---ENNGLVKAFRNIPGITLLNVSKLNLLRLAPGGHVGRFCIW 256 The following BLAST results are available for this feature:
BLAST of FC877912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877912 ID=FC877912; Name=FC877912; organism=Citrus clementina; type=EST; length=898bpback to top |