FC877930

Overview
NameFC877930
Unique NameFC877930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877930_ssr162 microsatellite FC877930_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11264 contig Ccv1_Contig11264:108..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RBP9X_DROME (Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.471e-34
Identity = 73/199 (36.68%), Postives = 106/199 (53.27%), Query Frame = 1
Query:  238 VSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFD-----LKEYEAQERMKQQMTIEKISLPPNVSYGLVRSYLQH 819
            +S + L V Y  V     D   V+   P P    +YYFE+ +   G  G + IG T++ F+M R PGW+  S GYHGDDG  +   G G+ +GPTFTT D +G  +N+ +   F+TKNG  +G  ++D+   L+PT+ + +  EEV  NFGQ+ F FD     +KE  +    K       +  P N+   LV +YL H
Sbjct:  433 LSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIGCCVNFVNNTCFYTKNGVDLGIAFRDLPTKLYPTVGLQTPGEEVDANFGQEPFKFDKIVDMMKEMRSNVLRKIDRYPHLLETPENLMNRLVSTYLVH 631          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RBP10_MOUSE (Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.388e-34
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYG 825
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD+++Y  + R K Q T+    +         V   +V SYL H+G
Sbjct:   93 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHGFPISARLGEWQAVLQNMVSSYLVHHG 297          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RBP10_HUMAN (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.226e-33
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYG 825
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD+++Y  + R K Q T+    +         V   +V SYL H+G
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHG 269          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RBP10_DANRE (Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.226e-33
Identity = 71/205 (34.63%), Postives = 110/205 (53.66%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYG 825
            ++ +S + L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD+++Y ++ R K    I +  +         V   +V SYL H+G
Sbjct:   53 YIGLSQNNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGVAFTDLPPNLYPTVGLQTPGEIVDANFGQQPFVFDIEDYMSEWRAKIHSMIARFPIGERLGDWQAVLQNMVSSYLVHHG 257          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RBP10_BOVIN (Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.226e-33
Identity = 72/205 (35.12%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHYG 825
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ+ F FD+++Y  + R K Q T+    +         V   +V SYL H+G
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGTCFYTKNGHSLGIAFTDLPANLYPTVGLQTPGEIVDANFGQQPFLFDIEDYMREWRAKVQGTVHCFPISARLGEWQAVLQNMVSSYLVHHG 269          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RANB9_MOUSE (Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 71/205 (34.63%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLP------PNVSYGLVRSYLQHYG 825
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  I++  +         +   +V SYL H+G
Sbjct:  102 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLVHHG 306          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RANB9_HUMAN (Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.568e-33
Identity = 71/205 (34.63%), Postives = 109/205 (53.17%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLP------PNVSYGLVRSYLQHYG 825
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  I++  +         +   +V SYL H+G
Sbjct:  177 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQAQIDRFPIGDREGEWQTMIQKMVSSYLVHHG 381          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RANB9_XENLA (Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.038e-32
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLP---PNVSYGLVRSYLQHYG 825
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N      F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  IE+  +     ++   +V SYL H+G
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQSPFVFDIEDYIREWRSKIQAQIERFPVAGEWQSMIQRMVSSYLVHHG 233          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RANB9_XENTR (Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.771e-32
Identity = 70/202 (34.65%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLP---PNVSYGLVRSYLQHYG 825
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N      F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  IE+  +     ++   +V SYL H+G
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLIDNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQSPFVFDIEDYIREWRTKIQAQIERFPVGGEWQSMIQRMVSSYLVHHG 233          
BLAST of FC877930 vs. ExPASy Swiss-Prot
Match: RANB9_DANRE (Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.771e-32
Identity = 71/204 (34.80%), Postives = 108/204 (52.94%), Query Frame = 1
Query:  229 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVGGGINYASQEFFFTKNGSLVGAVYKDIKGPLFPTIAVHSQNEEVLVNFGQKKFAFDLKEYEAQERMKQQMTIEKISLPPN------VSYGLVRSYLQHY 822
            ++ +S + L V Y        D   V+A  P P    VYYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G  +N  +   F+TKNG  +G  + D+   L+PT+ + +  E V  NFGQ  F FD+++Y  + R K Q  I++  +         +   +V SYL H+
Sbjct:   59 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNTCFYTKNGHSLGIAFTDLPPNLYPTVGLQTPGEVVDANFGQHPFVFDIEDYMREWRTKIQSQIDRFPIGEREGEWQAMIQKMVASYLVHH 262          
The following BLAST results are available for this feature:
BLAST of FC877930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RBP9X_DROME2.471e-3436.68Ran-binding proteins 9/10 homolog OS=Drosophila me... [more]
RBP10_MOUSE9.388e-3435.12Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 ... [more]
RBP10_HUMAN1.226e-3335.12Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
RBP10_DANRE1.226e-3334.63Ran-binding protein 10 OS=Danio rerio GN=ranbp10 P... [more]
RBP10_BOVIN1.226e-3335.12Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE... [more]
RANB9_MOUSE3.568e-3334.63Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE... [more]
RANB9_HUMAN3.568e-3334.63Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE... [more]
RANB9_XENLA1.038e-3234.65Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 ... [more]
RANB9_XENTR1.771e-3234.65Ran-binding protein 9 OS=Xenopus tropicalis GN=ran... [more]
RANB9_DANRE1.771e-3234.80Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA94CE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877930 ID=FC877930; Name=FC877930; organism=Citrus clementina; type=EST; length=825bp
CTCCTGTTCATGTATGATTCTTTGAAACAAGTGTAGGGTTTCACTTTTTG
CCAATTCCAAACAATGAGCACAAACAACACTAACAACATTAAAAATGAAG
ATCTCGGCTTGCACTTCCTCGCGCTGGCCCGGGCTTCTTCGAGCTCGATG
GGCGGAAAGCGGGAGGAGGAGGATTTTGAGGAAGAAGAGGTGCCGACGGA
GCTGAACACGATCAACAGCTCTGGAGGGTTCCTGGTGGTTTCGCCGGATA
AGTTGTCGGTCAAGTACACTAGCGTCAATCTGCACGGCCATGATGTCGGC
GTCGTCCAAGCTAACAAGCCGGCCCCTGTTAAGCGGCTTGTTTATTACTT
TGAGATTTACGTGGAGGACGCTGGTGCCAAGGGCCAGATTGCCATTGGAT
TTACCAGTGAGTCTTTCAAGATGCGGAGGCAACCAGGGTGGGAAGCGAAC
AGTTGTGGATACCATGGGGATGATGGATTGCTTTATCGTGGACAAGGAAA
GGGAGAGGCCTTTGGCCCTACGTTTACAACTAATGATACTGTTGGTGGTG
GTATTAACTATGCTTCACAGGAATTTTTTTTCACTAAAAATGGTTCATTA
GTAGGAGCAGTGTACAAGGACATCAAGGGTCCCTTGTTTCCGACCATTGC
TGTTCACAGCCAAAACGAGGAGGTTCTTGTCAACTTCGGCCAGAAAAAAT
TTGCTTTTGATCTTAAGGAGTACGAAGCACAAGAGAGGATGAAGCAACAA
ATGACAATTGAAAAGATTTCACTACCCCCTAATGTCAGTTATGGACTTGT
TCGCTCCTACTTACAACATTATGGA
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