FC877933

Overview
NameFC877933
Unique NameFC877933
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length851
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877933 vs. ExPASy Swiss-Prot
Match: Y1998_PARUW (Uncharacterized RNA methyltransferase pc1998 OS=Protochlamydia amoebophila (strain UWE25) GN=pc1998 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.522e-39
Identity = 85/224 (37.95%), Postives = 122/224 (54.46%), Query Frame = 3
Query:  180 ALQCPHFQSCSGCTHEFNLHRPIIVDEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 851
            AL CPHF SC+GC+H+  +  PI  +   +F +++  +        L GWRCRAKLAVRGT  +P+IGL+++G+H  ++IP C  HHPRIN AV +++  ++   + PY E  + GDLRY+Q  V          ER  +GKVQI  V N ++  SP S     L   L       +   + HS+W NF     N IF ++W  + GE   WE+  G+ I   P
Sbjct:    9 ALSCPHFDSCAGCSHQLFVEPPIWREVIENFKETLNPI---LHQGTLTGWRCRAKLAVRGTKQNPIIGLFKKGSHEALNIPFCLVHHPRINQAVTMIQNWMERHQLNPYQEHSQAGDLRYLQFVV----------ER-ASGKVQIVFVLNFKDFSSPESQIWRKLLLEL----AQETTNAFWHSIWVNFNPHATNTIFTDKWEKVWGEPYLWESFDGVKICFQP 214          
BLAST of FC877933 vs. ExPASy Swiss-Prot
Match: Y1452_GEOSL (Uncharacterized RNA methyltransferase GSU1452 OS=Geobacter sulfurreducens GN=GSU1452 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.913e-13
Identity = 63/230 (27.39%), Postives = 100/230 (43.48%), Query Frame = 3
Query:  189 CPHFQSCSGCTHEFNLHRPIIVDEATDF-------FKSIGLLDF--TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLAP 851
            C    SC GC     +H P  ++    F       ++++G  +   T  S     +R  AKL V GT   P+IG+Y+  +H V+DI  C  HHP IN  V  +++GI +  V+ Y+    +G LRY+ + ++            R G      V   R     N +++  LA+ L      +     +  V  N  +S  NVI G R   L  +    E +GGI  +++P
Sbjct:   88 CKRAGSCDGCPL-IVMHYPDQLNWKRTFTERQIRRYQTLGAAEVLATLPSPNQLHYRNSAKLVVSGTFRRPVIGIYRRNSHQVMDIGTCPLHHPLINRVVTAVKEGIAKCKVQVYNPRTGSGLLRYLVVRISE-----------RTGTAMAVFVTVER-----NYNEIHHLAKHL------QQSVPQVEVVVQNVNSSEGNVILGQRDYFLTRQHALTEELGGIRFTISP 294          
BLAST of FC877933 vs. ExPASy Swiss-Prot
Match: Y542_BACC1 (Uncharacterized RNA methyltransferase BCE_0542 OS=Bacillus cereus (strain ATCC 10987) GN=BCE_0542 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 56/230 (24.35%), Postives = 107/230 (46.52%), Query Frame = 3
Query:  189 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSIGLLDF---TFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 848
            CP ++ C GC         + N  R I+V +A   + + GL +    T      + +R +++L V       + GLY++ +H ++DI HC   H   N A +++R+ +++LNV  Y+E  + G +R           ++      + G+VQ+TL+  +  E+ PN ++   +AE        + +   + S+  N      +VIFG++   L G+    E +G +   L+
Sbjct:   80 CPVYEECGGCQLQHLDYKEQLNQKRDIVV-QAFQKYMNNGLEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVR-----------TIVTRTAVQTGEVQVTLI--TTKEELPNKEQF--IAEV-------QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELS 286          
BLAST of FC877933 vs. ExPASy Swiss-Prot
Match: Y426_BACAN (Uncharacterized RNA methyltransferase BA_0426/GBAA_0426/BAS0414 OS=Bacillus anthracis GN=BA_0426 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.712e-12
Identity = 54/229 (23.58%), Postives = 104/229 (45.41%), Query Frame = 3
Query:  189 CPHFQSCSGCT-------HEFNLHRPIIVDEATDFFKSI--GLLDFTFDSCRLYGWRCRAKLAVRGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 848
            CP ++ C GC         + N  R I+V     + K+     +  T      + +R +++L V       + GLY++ +H ++DI HC   H   N A +++R+ +++LNV  Y+E  + G +R           ++      + G+VQ+TL+  +  E+ PN ++   +AE        + +   + S+  N      +VIFG++   L G+    E +G +   L+
Sbjct:   80 CPVYEECGGCQLQHLDYKEQLNQKRDIVVQAFEKYMKNSMEEKIRPTLGMENPWHYRNKSQLQVGRKDEKVITGLYKQNSHQLIDIAHCMIQHKATNEATKVVRRILEKLNVSIYNEKKQKGLVR-----------TIVTRTAVQTGEVQVTLI--TTKEELPNKEQF--IAEV-------QKQMPAVKSIMQNVNWRKTSVIFGDKTFKLAGKEVIQETLGDLSFELS 286          
BLAST of FC877933 vs. ExPASy Swiss-Prot
Match: YFJO_BACSU (Uncharacterized RNA methyltransferase yfjO OS=Bacillus subtilis GN=yfjO PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.805e-11
Identity = 54/231 (23.38%), Postives = 100/231 (43.29%), Query Frame = 3
Query:  189 CPHFQSCSGC-------THEFNLHRPIIV---DEATDFFKSIGLLDFTFDSCRLYGWRCRAKLAV-RGTSTSPLIGLYQEGTHNVVDIPHCKAHHPRINAAVELLRQGIKELNVEPYDEDDRTGDLRYVQMAVTTYNTSLPASERYRNGKVQITLVWNSRNEKSPNSDKLESLAEFLWRNGGSRSREHYIHSVWANFQTSTNNVIFGNRWRHLLGETDFWENVGGIDISLA 848
            CP ++ C GC       + +    R I++   +  T F      +  T      + +R +++  + R  S S + GLY   +H++V I  C   HP  N    ++R+ +++ NV  Y+E  R GD+R +   V            +  G+VQ+ LV  +  E  P+ +++    +          R   + S+  N   +  +VIFG + + L G+T   E +G +   L+
Sbjct:   82 CPVYEQCGGCQLQHLAYSQQLREKRDIVIQSLERHTKFKVENMEIKETIGMDNPWNYRNKSQFQIGRSQSGSIIAGLYGLDSHDIVPIKDCIVQHPATNKTTGIVRRILEDFNVSVYNERKRKGDVRTIVTRV-----------GFETGEVQVVLV--TAKETLPHKEEIVKAIQ---------KRLPEVKSIIQNVNGAKTSVIFGEKTKQLAGKTVIQEVLGDVSFELS 290          
The following BLAST results are available for this feature:
BLAST of FC877933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1998_PARUW4.522e-3937.95Uncharacterized RNA methyltransferase pc1998 OS=Pr... [more]
Y1452_GEOSL1.913e-1327.39Uncharacterized RNA methyltransferase GSU1452 OS=G... [more]
Y542_BACC14.712e-1224.35Uncharacterized RNA methyltransferase BCE_0542 OS=... [more]
Y426_BACAN4.712e-1223.58Uncharacterized RNA methyltransferase BA_0426/GBAA... [more]
YFJO_BACSU6.805e-1123.38Uncharacterized RNA methyltransferase yfjO OS=Baci... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA5AH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA5AH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877933 ID=FC877933; Name=FC877933; organism=Citrus clementina; type=EST; length=851bp
CTGAGCTTGACTGTACTTACTAATCACAAATGCCTGCGTGCCTCCTCTCC
GCTCGTCCTCCCTCTCCGGTCATAACCTGCCGTGTGTCACTCGGAGCAGT
GCGCAACCCTCCACCCCCAGCTCCTCCTTCTTCTCTCCCTCTAGACCCTC
CTGCGGCCAACCTCCCATCTCTAACTTGCGCCCTACAGTGCCCTCACTTC
CAATCCTGCTCTGGTTGTACGCACGAGTTCAATCTCCACCGTCCGATCAT
CGTCGACGAGGCTACTGATTTTTTCAAGAGTATTGGTCTTTTAGATTTCA
CTTTCGATAGCTGTAGACTGTACGGATGGAGGTGTCGAGCCAAATTGGCT
GTCCGCGGCACGTCGACAAGCCCTCTGATTGGACTGTATCAGGAGGGGAC
TCATAATGTAGTGGATATTCCTCACTGTAAAGCCCATCATCCTCGTATTA
ATGCTGCTGTTGAGCTGTTGAGACAAGGAATTAAAGAGTTAAATGTTGAG
CCATATGATGAGGATGATAGGACAGGTGATTTGCGATATGTTCAGATGGC
TGTGACCACTTACAACACATCCCTTCCCGCCTCGGAAAGATACAGAAATG
GAAAAGTACAGATTACTTTAGTTTGGAATTCAAGAAATGAAAAGTCCCCC
AATTCGGACAAATTAGAGTCTTTAGCCGAGTTTTTATGGAGAAATGGTGG
TTCAAGGAGCCGTGAGCATTACATTCACTCTGTATGGGCAAACTTTCAGA
CATCAACTAATAATGTAATATTTGGCAATAGGTGGAGACATCTTTTAGGA
GAAACTGACTTTTGGGAAAATGTTGGAGGAATTGATATATCTTTGGCTCC
A
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