FC877943

Overview
NameFC877943
Unique NameFC877943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig106 contig Ccv1_Contig106:13..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877943 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.498e-37
Identity = 87/231 (37.66%), Postives = 122/231 (52.81%), Query Frame = 3
Query:   75 EAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRNALTRSLNRLNHFNQNXXXXXXXXXQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTYNNGLFNSKTTXXXXXXXXXXXXXXXMRTTIAGKFSYCLVPVSST 767
            EA+  GF + L H DS K+       T +Q L  A+ R   RL               +  +   +  YL+ +SIGTP     A+ DTGSDLIWTQC+PC  +QC+ Q +P+F+P+ SS++ +LPCSS  C +L+  +CS   CQY+  YGDGS + G++ TET+T GS     V++P ITFGCG  N G                      +  T   KFSYC+ P+ S+
Sbjct:   35 EAKVTGFQIMLEHVDSGKNL------TKFQLLERAIERGSRRLQRLEA--MLNGPSGVETSVYAGDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPC--TQCFNQSTPIFNPQGSSSFSTLPCSSQLCQALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGS-----VSIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVT---KFSYCMTPIGSS 247          
BLAST of FC877943 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.096e-31
Identity = 76/226 (33.63%), Postives = 113/226 (50.00%), Query Frame = 3
Query:   90 GFSVELIHRDSPKSPFYNSSETPYQRLRNALTRSLNRLNHFNQNXXXXXXXXXQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTYNNGLFNSKTTXXXXXXXXXXXXXXXMRTTIAGKFSYCLVPVSST 767
            G  V+L   DS K+       T Y+ ++ A+ R   R+   N           +  +   +  YL+ ++IGTP +   A+ DTGSDLIWTQCEPC  +QC+ Q +P+F+P+ SS++ +LPC S  C  L  ++C+   CQY+  YGDGS + G +ATET T      +  ++P I FGCG  N G                      +     G+FSYC+    S+
Sbjct:   41 GLRVDLEQVDSGKNL------TKYELIKRAIKRGERRMRSINA--MLQSSSGIETPVYAGDGEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPC--TQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPSETCNNNECQYTYGYGDGSTTQGYMATETFTF-----ETSSVPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLG---VGQFSYCMTSYGSS 248          
BLAST of FC877943 vs. ExPASy Swiss-Prot
Match: ASPL2_ARATH (Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.248e-16
Identity = 62/207 (29.95%), Postives = 91/207 (43.96%), Query Frame = 3
Query:  279 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCP--PSQCYMQ-DSPLFDPKMSSTYKSLPCSSSQCASLNQK-SCS-GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALP---GITFGCGTYNNG-LFNSKTTXXXXXXXXXXXXXXXMRTTIAGK----FSYCLVPVSSTKINFGTNGIVSGPGVVSTPLTKAKPFMFSQL 860
            Y  +I +G+PP E     DTGSD++W  C+PCP  P++  +     LFD   SST K + C    C+ ++Q  SC   + C Y + Y D S S+G    + +TL   TG     P    + FGCG+  +G L N  +                 +    G     FS+CL  V          G +   GVV +P  K  P + +Q+
Sbjct:   74 YFTKIKLGSPPKEYHVQVDTGSDILWINCKPCPKCPTKTNLNFRLSLFDMNASSTSKKVGCDDDFCSFISQSDSCQPALGCSYHIVYADESTSDGKFIRDMLTLEQVTGDLKTGPLGQEVVFGCGSDQSGQLGNGDSAVDGVMGFGQSNTSVLSQLAATGDAKRVFSHCLDNVK--------GGGIFAVGVVDSPKVKTTPMVPNQM 272          
BLAST of FC877943 vs. ExPASy Swiss-Prot
Match: NEP2_NEPDI (Aspartic proteinase nepenthesin-2 (Fragments) OS=Nepenthes distillatoria PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  345 DLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTYNNGLFNSKTT 665
            DLIWTQCEPC  +QC+ QD        SS++ +LPC S  C  L  ++C   +CQY+  YGDGS + G +A E            ++P I FGCG  +N   +S TT
Sbjct:   20 DLIWTQCEPC--TQCFSQD--------SSSFSTLPCESQYCQDLPSETC---DCQYTYGYGDGSSTQGYMAXE---------DGSSVPNIAFGCG--DNLQIDSGTT 102          
BLAST of FC877943 vs. ExPASy Swiss-Prot
Match: NEP1_NEPDI (Aspartic proteinase nepenthesin-1 (Fragments) OS=Nepenthes distillatoria PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 3
Query:  249 QADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCG 629
            +  +   +  YL+ +SIGTP     A+ DTGSDLIWTQ +  P +Q + Q     DP+ SS++ +LPC                       YGD S + G++ TET T GS     V++P ITFG G
Sbjct:    7 ETTVYAGDGEYLMXLSIGTPAQPFSAIMDTGSDLIWTQXQ--PXTQXFXQS----DPQGSSSFSTLPC----------------------GYGD-SETQGSMGTETFTFGS-----VSIPNITFGXG 99          
The following BLAST results are available for this feature:
BLAST of FC877943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NEP1_NEPGR1.498e-3737.66Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR2.096e-3133.63Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
ASPL2_ARATH3.248e-1629.95Aspartic proteinase-like protein 2 OS=Arabidopsis ... [more]
NEP2_NEPDI1.970e-1341.12Aspartic proteinase nepenthesin-2 (Fragments) OS=N... [more]
NEP1_NEPDI2.409e-1136.22Aspartic proteinase nepenthesin-1 (Fragments) OS=N... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO16RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877943 ID=FC877943; Name=FC877943; organism=Citrus clementina; type=EST; length=866bp
CTTTGATTATGGCGACCTTCTTGAGTTGTGTATTCATTCTCTTCTTTCTT
TGTTTTTATGTCGTCTCTCCTATAGAAGCTCAAACTGGAGGTTTCAGTGT
TGAGCTAATCCACCGTGACTCTCCCAAGTCTCCCTTTTACAACTCCAGTG
AAACTCCCTACCAACGATTGAGAAATGCTTTGACTCGTTCTCTCAATCGT
CTCAATCACTTTAATCAGAACTCATCAATATCTTCATCAAAAGCTTCCCA
AGCTGATATAATACCCAATAACGCGAACTATCTCATACGTATATCAATTG
GTACTCCCCCTACTGAAAGACTAGCTGTTGCTGATACAGGAAGTGACCTC
ATATGGACGCAGTGCGAGCCTTGCCCACCATCACAATGTTACATGCAGGA
CTCTCCACTTTTTGATCCTAAAATGTCATCTACTTACAAATCTCTTCCAT
GCTCGTCAAGCCAATGTGCATCTCTTAACCAAAAATCTTGCTCTGGGGTA
AATTGTCAATACTCGGTCTCTTATGGAGATGGATCCTTCTCAAATGGCAA
TCTTGCTACCGAAACTGTTACTTTGGGTTCAACAACAGGACAGGCCGTGG
CTCTGCCTGGAATAACCTTTGGTTGCGGAACATACAATAATGGCTTGTTT
AATTCAAAAACAACCGGAATTGTTGGCCTTGGAGGCGGCGATATTTCACT
TATTTCTCANATGCGAACTACAATTGCTGGTAAATTCTCCTATTGTTTGG
TTCCAGTTAGCTCAACCAAAATCAATTTTGGCACCAATGGAATTGTTTCA
GGTCCAGGAGTGGTTTCTACTCCCTTGACTAAAGCAAAACCTTTTATGTT
CTCACAATTGATGCAA
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