FC877958
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_SCHPO (Coatomer subunit delta OS=Schizosaccharomyces pombe GN=ret2 PE=2 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 1.272e-66 Identity = 138/244 (56.56%), Postives = 173/244 (70.90%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSR--AQRLGGGAAIPRQXXXXXXXXXXXXXXITDS-YDSYNAAKNEKFSKPLASRGKGMQLGKKNKTGSMF 836 MV+L+ +I R GK I++RQFR+M R RVE+LL+SFP L SQ+TTVE DNVRFVYQPLDELY+VLITN QSNILQDI TLHL +QVV SIC SL+EREI AFE+ +AFDE + GYR+N++L+QIKT+L+MESHEE+IQEI++RNKE+EATEERKR+ KQLE+Q+KE +R AQ L A +S +SY+AA A + KGMQLGKK T ++ Sbjct: 1 MVVLAVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQPLDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIEATEERKRRIKQLELQKKEAARRAAQNLPSADAYESIGYQTVNTTFATSNVEDESAMESYHAAAKAS----SAPKAKGMQLGKKKNTSLLY 240
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_YEAST (Coatomer subunit delta OS=Saccharomyces cerevisiae GN=RET2 PE=1 SV=3) HSP 1 Score: 198.364 bits (503), Expect = 4.856e-50 Identity = 100/177 (56.50%), Postives = 140/177 (79.10%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKL-ADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQ-GYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSR 638 MV+L+A+ITTR GKP+L+RQF+ + + RV LL++F L ++ +S HT VE +VR+VY+P D Y++LITNRQSNI++D++TL+LF+Q + S S ++EI AFE+LS+FDE+V+ GY+ENL+ +Q++T+L MESHEERIQEII RNKE+EATEERKR+AK E+ RKE R Sbjct: 1 MVVLAASITTRQGKPLLSRQFKDLSKDRVLELLSNFQNLVSEISSDHTFVEDKHVRYVYRPFDNYYIILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSMGGYKENLSFTQVQTYLSMESHEERIQEIIERNKEIEATEERKRRAK--EIARKEHER 175
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_CHICK (Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 1.082e-49 Identity = 93/180 (51.67%), Postives = 139/180 (77.22%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLG 653 MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+ C++L+E EI+ F+L+ AFDE+V GYREN+ L+QI+TF +M+SHEE++ + +E EA E +RKAK+L+ R++ A+RLG Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRD---AERLG 177
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_RAT (Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49 Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659 MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+ C++L+E EI+ F+L+ AFDE+V GYREN+ L+QI+TF +M+SHEE++ + +E EA E +RKAK+L+ R++ R + G Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_PONAB (Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49 Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659 MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+ C++L+E EI+ F+L+ AFDE+V GYREN+ L+QI+TF +M+SHEE++ + +E EA E +RKAK+L+ R++ R + G Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_MOUSE (Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49 Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659 MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+ C++L+E EI+ F+L+ AFDE+V GYREN+ L+QI+TF +M+SHEE++ + +E EA E +RKAK+L+ R++ R + G Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_HUMAN (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49 Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659 MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+ C++L+E EI+ F+L+ AFDE+V GYREN+ L+QI+TF +M+SHEE++ + +E EA E +RKAK+L+ R++ R + G Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_BOVIN (Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49 Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659 MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+ C++L+E EI+ F+L+ AFDE+V GYREN+ L+QI+TF +M+SHEE++ + +E EA E +RKAK+L+ R++ R + G Sbjct: 1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD1_ORYSJ (Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 6.143e-45 Identity = 101/259 (39.00%), Postives = 156/259 (60.23%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGGAAI--PRQXXXXXXXXXXXXXXITD-------SYDSYNAAKNEKFSKPLAS-----RGKGMQLGKKNKTGSMFDQVR 848 MV+L+A+I ++SGK +++RQF M R R+E LLA+FPKL T QHT VE +NVR+VYQP++ LY++LITN+QSNIL+D+ TL L +++V SLDE + + AFEL+ AFDE ++ G +EN+T+ Q+K + +MESHEE+ +++ ++K E + K+KA +L+ R E + + GG ++I PR D + A K +P A+ +G GM+LGK KT + ++ Sbjct: 1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDK-GGYSSISGPRVIEKTFNDMSITGSGFGSGSGLGGLGMDMDSFASKPKGGRPSAAATAPGKGLGMKLGKTQKTNQFLESLK 258
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_DICDI (Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 1.048e-44 Identity = 94/186 (50.54%), Postives = 132/186 (70.97%), Query Frame = 3 Query: 114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLE-MQRKEVSRAQRLGGGAAI 668 MV+L+AAI T++GK +L+RQF +M +SRVE LLA+FPKL QHT +E +N+R+VYQPL+ LY+VLITN+ SNIL+D+ TLHL A++V + DE +I++ AFEL+ FDEV+ GY+E +TL QIK F+ MESHEE + + K+ EA KAK++E M+ +E+ R +R GG I Sbjct: 1 MVVLAAAICTKNGKALLSRQFSEMTKSRVEGLLAAFPKLIGLGRQHTFIETENIRYVYQPLESLYIVLITNKNSNILEDLETLHLLAKLVPEY-SNFDEYDISKNAFELIFTFDEVIAMGYKERVTLQQIKHFISMESHEEERFRMEEKIKQKEAQILASSKAKEIERMRHEEMLRGKRSGGYTGI 185 The following BLAST results are available for this feature:
BLAST of FC877958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877958 ID=FC877958; Name=FC877958; organism=Citrus clementina; type=EST; length=909bpback to top |