FC877959

Overview
NameFC877959
Unique NameFC877959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10509 contig Ccv1_Contig10509:35..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.381e-62
Identity = 137/223 (61.43%), Postives = 150/223 (67.26%), Query Frame = 2
Query:  278 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTA---PGAAQSRLKSNSGESDADSD-----RF---------XXXXXXXXXXXXXXXXXXWGKEMEARLKGISSSSGEATPIKSVSGR-RVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNR 892
            MLTCIARSK+ GD+S  QP+             +  KSLTSQLKDMALKASGAYRHC+PCTA    G  Q  +K+N   S   SD     RF                           WGKEMEARLKGI  SSGEATP KS SGR RVDP+VF+EE EPKEWVAQVEPGVLITFVSLP GGNDLKRIRFSRDMFNK QAQRWWA+NYD+VMELYNVQ+ +R
Sbjct:    1 MLTCIARSKRAGDESSGQPDDPD---------SKNAKSLTSQLKDMALKASGAYRHCTPCTAAQGQGQGQGPIKNNPSSSSVKSDFESDQRFKMLYGRSNSSITATAAVAATQQQQPRVWGKEMEARLKGI--SSGEATP-KSASGRNRVDPIVFVEEKEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSR 211          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 4.000e-49
Identity = 108/209 (51.67%), Postives = 134/209 (64.11%), Query Frame = 2
Query:  278 MLTCIARSKQ----PGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNR 892
            MLTCIA +KQ     G     + +           + + IKSLTSQ+KDMA+KASGAY+ C PC+  G++      +  +SD  S+                     GKEME+RLKG  S  GE TP +S+SGR    V   EE+E KEWVAQVEPGVLITFVSLP GGND+KRIRFSR+MF+KWQAQ+WWAEN+D+VMELYNVQ+FN+
Sbjct:    1 MLTCIACTKQLNTNNGGSKKQEEDEEEEDRVIETPRSKQIKSLTSQIKDMAVKASGAYKSCKPCS--GSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLS--GEGTP-ESMSGRTESTVFMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVMELYNVQQFNQ 204          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.287e-47
Identity = 113/233 (48.50%), Postives = 137/233 (58.80%), Query Frame = 2
Query:  278 MLTCIARSKQ--PGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRF--------------------------SRDMFNKWQAQRWWAENYDRVMELYNVQRFNR 892
            MLTCIA +KQ    +   ++ E            +QAIKSLTSQLKDMA+KASGAY++C PC+  G        N  +SDA SD                    WG EME+RLKGISS  G  T   S+SGR  + +VF+E++E KEWVAQVEPGVLITFVSLP+GGNDLKRIRF                           R+MFNKWQAQ+WW EN+++VMELYNVQ FN+
Sbjct:    1 MLTCIACTKQLNTNNGGSTREEDEEHGVIGTPRTKQAIKSLTSQLKDMAVKASGAYKNCKPCS--GTTNRNQNRNYADSDAASDSGRFHYSYQRAGTATSTPKIWGNEMESRLKGISSEEGTPT---SMSGR-TESIVFMEDDEVKEWVAQVEPGVLITFVSLPQGGNDLKRIRFRSTRFPYYRDQLLLWCRQGWVFWPQNCREMFNKWQAQKWWVENFEKVMELYNVQ-FNQ 226          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.631e-44
Identity = 104/220 (47.27%), Postives = 125/220 (56.82%), Query Frame = 2
Query:  278 MLTCIARSKQ----------PGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPC-----TAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNR 892
            MLTCIA SKQ            DD+                 +QAIK+LT+Q+KDMALKASGAYRHC PC     ++P A   R       +D+ SDRF                      + AR   ++    E    +   G   D     E++E KEWVAQVEPGVLITF+SLP GGNDLKRIRFSR++FNKWQAQRWWAENY++VMELYNVQRFN+
Sbjct:    1 MLTCIACSKQLAGGAPPLREQSDDADDAAVARGAGECATPSTRQAIKALTAQIKDMALKASGAYRHCKPCAGSSSSSPAAGARRHHPYHAYADSGSDRFHYAYRRAGSGGDATP------SVSARTDFLAGDEEEEEEEEEEEGTTADGS---EDDEAKEWVAQVEPGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQRFNQ 211          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRX_ARATH (Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.901e-39
Identity = 94/214 (43.93%), Postives = 121/214 (56.54%), Query Frame = 2
Query:  278 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXW---------GKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNR 892
            M +CIA +K  G + +                ++A+KSLT Q+KDMALK SGAY+ C PCT  G++ S LK     S  D D                    W            +E++   I  +  E     S+S +  D  V ++++ PKEW+AQVEPGV ITF SLP GGNDLKRIRFSR+MF+KWQAQRWW ENYD+++ELYNVQRFNR
Sbjct:    1 MFSCIACTKADGGEEVEH----GARGGTTPNTKEAVKSLTIQIKDMALKFSGAYKQCKPCT--GSSSSPLKKGH-RSFPDYDNASEGVPYPFMGGSAGSTPAWDFTNSSHHPAGRLESKFTSIYGNDRE-----SISAQSCD--VVLDDDGPKEWMAQVEPGVHITFASLPTGGNDLKRIRFSREMFDKWQAQRWWGENYDKIVELYNVQRFNR 200          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL1_ARATH (Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.130e-35
Identity = 88/205 (42.93%), Postives = 118/205 (57.56%), Query Frame = 2
Query:  278 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNR 892
            M TCI  +K    D   + E            ++A+KSLT+Q+KDMA K SG+++   P   PG++ S L+    + D  S+                         ++       +S      +S+S +  D  V +E++EPKEW+AQVEPGV ITFVSLP GGNDLKRIRFSR++F+KWQAQRWW ENYDR++ELYNVQRFNR
Sbjct:    1 MFTCINCTKMA--DRGEEDEEDEARGSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKP--TPGSSSSNLRKFP-DFDTASESVPYPYPGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYGGERESISAQSCD--VVLEDDEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVFDKWQAQRWWGENYDRIVELYNVQRFNR 198          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL2_ORYSJ (Protein Brevis radix-like 2 OS=Oryza sativa subsp. japonica GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.843e-29
Identity = 91/232 (39.22%), Postives = 112/232 (48.28%), Query Frame = 2
Query:  278 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHC-----SPC--TAPGAAQSRLKSNSG-------ESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISSS---SGEATPIKSVSGRRVDP---------VVFIEENEPKEWVAQVEPGVLITFVSLPRG-GNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNR 892
            ML CIA S + G +                    + KSLTSQLKDM LK SG+ RH      SP   T+     SRL +  G        SD   + +                  W    +   +        S  A+ + S+     D          V+  E+  P+EW AQVEPGV ITFVS+P G GNDLKRIRFSR+MFNKW+AQRWW ENYDRV+ELYNVQ F+R
Sbjct:    1 MLACIACSTKDGGEG---------GHRSATATPNSGKSLTSQLKDMVLKFSGSGRHQYKSGGSPSLRTSRFHRSSRLAAYPGIIDESGFTSDGAGEAYTYMRTTTASAGARAAPSTWDLPPKVNHRSFQPRVIRSPSASGVPSIGEEDYDDDDDDDDEETVLLEEDRVPREWTAQVEPGVQITFVSIPGGAGNDLKRIRFSREMFNKWEAQRWWGENYDRVVELYNVQTFSR 223          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL4_ORYSJ (Protein Brevis radix-like 4 OS=Oryza sativa subsp. japonica GN=BRXL4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.922e-24
Identity = 71/165 (43.03%), Postives = 87/165 (52.73%), Query Frame = 2
Query:  401 QLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISSSSGEATPIKSVSGRRVDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGG-NDLKRIRFSRDMFNKWQAQRWWAENYDRVMELYNVQRFNR 892
            QLKDM +K SG  RH       G+   R ++ S      S  +                   G        G S SS  +TP    +           E E +EWVAQVEPGV ITFVSL  GG NDLKRIRFSR+M++KWQAQ+WW EN +R+MELYNV+RF+R
Sbjct:    3 QLKDMVMKLSGTSRHHGQQRRGGSPPPRGRTTSVYR---SGYYRPGMVQDDMAVPPATYLGGG--------GTSMSSASSTPAWDFARPA--------EGEAREWVAQVEPGVQITFVSLAGGGGNDLKRIRFSREMYDKWQAQKWWGENNERIMELYNVRRFSR 148          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL3_ORYSJ (Putative protein Brevis radix-like 3 OS=Oryza sativa subsp. japonica GN=BRXL3 PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.584e-21
Identity = 73/219 (33.33%), Postives = 99/219 (45.21%), Query Frame = 2
Query:  278 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGA--YRHCSPCTA--------------PGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISSSSGEA----TPIKSVSGRR-VDPVVFIEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELY 871
            ML CIA S + G +  S+              + A+KSLTSQLKDM LK SG+  ++H    TA              PG         +     ++  +                  W        +G    +G +    T I+S+      D V  +E+  P+EW AQVEPGV ITFV+LP GGNDLKRIRFSR+ F + +A+ WW  N DR+   Y
Sbjct:    1 MLACIACSSKEGGEDGSRGAATPHG-------RDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAGSPSFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212          
BLAST of FC877959 vs. ExPASy Swiss-Prot
Match: BRXL5_ORYSJ (Putative protein Brevis radix-like 5 OS=Oryza sativa subsp. japonica GN=BRXL5 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 2
Query:  707 KEWVAQVEPGVLITFVSLPRG-GNDLKRIRFSRDMFNKWQAQRWWAENYDRVMELY 871
            +EWVA+ EPGVL+T      G  N L+RIRF  ++F+ W AQ WWA+N+DR+ ELY
Sbjct:  109 REWVAEPEPGVLLTLAPRADGVSNRLRRIRFREEVFDAWAAQCWWADNHDRIAELY 164          
The following BLAST results are available for this feature:
BLAST of FC877959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BRXL4_ARATH5.381e-6261.43Protein Brevis radix-like 4 OS=Arabidopsis thalian... [more]
BRXL2_ARATH4.000e-4951.67Protein Brevis radix-like 2 OS=Arabidopsis thalian... [more]
BRXL3_ARATH1.287e-4748.50Protein Brevis radix-like 3 OS=Arabidopsis thalian... [more]
BRXL1_ORYSJ8.631e-4447.27Protein Brevis radix-like 1 OS=Oryza sativa subsp.... [more]
BRX_ARATH4.901e-3943.93Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BR... [more]
BRXL1_ARATH1.130e-3542.93Protein Brevis radix-like 1 OS=Arabidopsis thalian... [more]
BRXL2_ORYSJ7.843e-2939.22Protein Brevis radix-like 2 OS=Oryza sativa subsp.... [more]
BRXL4_ORYSJ9.922e-2443.03Protein Brevis radix-like 4 OS=Oryza sativa subsp.... [more]
BRXL3_ORYSJ1.584e-2133.33Putative protein Brevis radix-like 3 OS=Oryza sati... [more]
BRXL5_ORYSJ5.647e-1153.57Putative protein Brevis radix-like 5 OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA44BD09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877959 ID=FC877959; Name=FC877959; organism=Citrus clementina; type=EST; length=892bp
CAGCCAGCAAAGCAGCAGCAATTGCAAGCAAGCCCTCTGTTTCTCAGTTT
CTCTTTTCTTTTGCTCTTCCTTTTATTATTAATGAAGTTTAAAACCTAAT
CCTTCATTTCGCTTATGATTAAAGAGAATCTCTGATGGGTATACCTGTAA
CTTGGCATTAAAGTGAGTGAGGGAGTAAGCTTCTCGATGCTTGCGCTCGG
ATTTTGAAGCTGTGAATTCAGAATTTACTGCCACTACAATTCCAACATAA
ATTGAGTTGGAGAGTAAAAACTAGAAAATGCTGACGTGCATAGCTCGGTC
GAAGCAACCGGGGGATGACTCACTTAGTCAACCCGAGGACTCTGACTCAT
CGACCGGCAGCGGCAGTACCAAACAACAAGCCATCAAATCTCTCACATCT
CAGCTAAAGGACATGGCGTTAAAGGCATCAGGAGCGTACCGACACTGCAG
CCCATGCACGGCTCCTGGTGCGGCTCAGAGTCGACTCAAGAGTAACTCGG
GAGAGTCTGATGCCGATTCGGACCGGTTCAGGTGGTCGTACAGAAGGACC
GGTAGTTCTAGCTCCACCACACCGAGGACCACTTGGGGGAAGGAGATGGA
GGCCAGGCTTAAGGGAATATCGAGTTCGAGTGGCGAGGCCACTCCGATAA
AATCGGTGAGTGGTCGCCGTGTTGACCCGGTCGTGTTCATTGAAGAGAAT
GAGCCGAAGGAATGGGTGGCCCAGGTGGAGCCGGGTGTGCTTATTACCTT
TGTTTCTTTGCCACGTGGAGGCAATGATCTTAAGCGGATACGCTTCAGTC
GAGACATGTTTAACAAATGGCAAGCTCAAAGATGGTGGGCTGAAAACTAC
GATAGGGTCATGGAACTTTATAATGTACAGAGGTTTAACCGC
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