FC877961

Overview
NameFC877961
Unique NameFC877961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:32..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877961 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.702e-60
Identity = 117/135 (86.67%), Postives = 126/135 (93.33%), Query Frame = 2 
Query:  461 LADLKNEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKISALEGAESTVIMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPQMG 865
            L D K+  SFLSSDGSL +HAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR  SFEYGRYGNPTTVV+E+KISALEGAEST++MASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIF+E  LP++G
Sbjct:  164 LTDSKH--SFLSSDGSLTVHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRSVSFEYGRYGNPTTVVLEDKISALEGAESTLVMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFMENFLPKLG 296

HSP 2 Score: 70.8626 bits (172), Expect = 1.119e-11
Identity = 39/64 (60.94%), Postives = 44/64 (68.75%), Query Frame = 2 
Query:  119 DPDFSGS--ARFDKPRISAARVIGASTASFSGLSSLIFRFPPNFVRQLSTKARRNCSNIGVAQI 304
            DPD  GS      + R+ A+  I +S    +GLSS I RFPPNFVRQLS KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88
The following BLAST results are available for this feature:
BLAST of FC877961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH1.702e-6086.67Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA22DG12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877961 ID=FC877961; Name=FC877961; organism=Citrus clementina; type=EST; length=885bp
AGAATACAGAGAGAGCAAAGCCGCCGTTCAATACGACGTCGTAATGGCCG
TGTCCTCATGTTCGAGTCAAAAAATTTTGTCCTTCTCTTCTTCTTGTTCG
TCTTTTGAGTGCCGTTCCGATCCCGACTTCTCGGGCTCGGCTCGGTTTGA
TAAACCGAGGATCTCGGCGGCGCGAGTCATCGGAGCGTCGACGGCGTCGT
TTAGCGGCCTGTCGTCTCTGATTTTCAGGTTTCCGCCGAACTTCGTGCGC
CAGCTTAGCACGAAGGCCAGGAGGAACTGCAGCAACATCGGCGTGGCGCA
AATCGTGGCGGCTTCGTGGTCGAACGGTGTGGGTTCCGGCTCTAACTCGG
CGGCGGCTGCAGCAGCTTCCGCTGCCCCCGCCCCGCCCGTCCCCGTCGAG
ATTACGAGCGGCGATGACATCGCGCTTGTTGACGGATTGAAAAATGTACA
TCTGGAGGCCCTCGCTGATTTGAAAAACGAGGCTTCGTTTTTGAGCTCCG
ATGGGAGCCTTGCAATTCATGCCGGTGAAAGATTAGGTCGTGGTATAGTA
ACAGATGCAATTACTACCCCAGTGGTGAATACTTCTGCTTACTTCTTTAA
GAAAACTGCTGAGCTTATTGATTTCAAGGAGAAACGTCGTGCAAGTTTTG
AATATGGGAGGTATGGAAACCCAACAACTGTGGTCGTTGAGGAGAAGATA
AGTGCACTTGAGGGGGCTGAATCAACTGTGATTATGGCATCTGGAATGTG
TGCTAGCACAGTCATGTTGTTGGCATTGGTTCCAGCCGGTGGGCATATTG
TGACAACCACTGATTGCTACAGGAAGACTAGGATTTTCATTGAGACTGTT
CTGCCCCAAATGGGATCACGGCTACGGTGATTGAC
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