FC877964

Overview
NameFC877964
Unique NameFC877964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877964_ssr17 microsatellite FC877964_ssr17:17..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10197 contig Ccv1_Contig10197:29..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877964 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.493e-28
Identity = 92/247 (37.25%), Postives = 107/247 (43.32%), Query Frame = 1 
Query:  142 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGXXXXXXXXXXXXXXXXXQRQKXXXXXXXXXXXXXDQKLVFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPEL------SPAFFFSGDDEVESPLPAKKPRL 792
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG                 QR +             +    FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE            +  D+EV+SPL  KKPRL
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGK---------------QRVQAPQPESFAAPVPAE----FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRL 258
The following BLAST results are available for this feature:
BLAST of FC877964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT1.493e-2837.25Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA78AH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877964 ID=FC877964; Name=FC877964; organism=Citrus clementina; type=EST; length=807bp
TGAATCTGAAATTAAGCTCTCTCTCTCTCTCTCGCTCGCTCTTTCACACT
CACTCTTGGTTTTAGATTCAAAAGAGTAACGGAGATGGCACTGGAAGCTC
TCAACTCTCCAACTACTTCGACGCCGCCGTTTCACTTCGAAGAAGCTAAT
CTTCACTGCCTTGAGCCATGGACCAAACGCAAGCGCTCAAAGCGTCCACA
CAATCCTCCAACTGAAGAAGAGTATCTCGCGCTCTGCCTCGTCATGCTTG
CACGTGGCACAACCTCCACCGCCGCCTTAACTAACTGCAACACGACCACC
ACCGCCTCACAGCGACAGAAGTCTCCTGCTCCATCTACTGCTGCAACGAC
GTCGTCCTCTGACCAGAAGCTTGTCTTCAAGTGCAGCGTGTGCGACAAGG
CGTTTTCTTCTTACCAAGCCTTGGGTGGTCACAAGGCCAGCCACCGTAAG
GGATCTGGGGGCGGCGACGAACACTCCGCTTCCACTACCACCAACACCAA
CGCAACCGCCACGACCACCGGCGTACCGAACGCCACTGGTAGGACCCACG
AGTGTTCCATCTGTCACAAGTCCTTCCCCACCGGCCAAGCCTTGGGCGGA
CACAAACGTTGTCACTACGATGGCGGCGAGAAGAGCGGAGTGACGTCATC
CGGGTCCAGTAGCACTCACAGCCAAGTCAGCCACCGTGACTTTGACCTCA
ACCTCCCTGTCTTACCGGAGCTCTCCCCTGCTTTCTTCTTCTCTGGTGAT
GACGAGGTGGAGAGTCCACTGCCGGCGAAGAAGCCGCGTCTCTTCTTGCC
CCCCAAA
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