FC877972

Overview
NameFC877972
Unique NameFC877972
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877972_ssr515 microsatellite FC877972_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10342 contig Ccv1_Contig10342:25..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877972 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 47/95 (49.47%), Postives = 54/95 (56.84%), Query Frame = 2 
Query:   89 MATEDPVVDTETLPQPESAEPV------VEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 355
            MATE+P+V  ET+P+P   EP       V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK
Sbjct:    1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEK 94
[Close]
BLAST of FC877972 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:   89 MATEDPVVDTETLPQPESAEPVVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEK 355
            MATE+PV+  E + + ++A   V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK
Sbjct:    1 MATEEPVIVNEVVEE-QAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEK 88
The following BLAST results are available for this feature:
BLAST of FC877972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
H1_PEA7.749e-1349.47Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_SOLLC1.461e-1146.07Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionIC0AAA44BD11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877972 ID=FC877972; Name=FC877972; organism=Citrus clementina; type=EST; length=885bp
CCACCACCCGCATTTTTAGATCCAATCTTTCGTTATCTTTCTTGCTCGCT
CTCCACTTCCTAATTTCTGAAACCCAATTCGATTCAAAATGGCCACTGAA
GATCCCGTTGTGGACACGGAGACCCTTCCTCAACCGGAATCCGCTGAACC
GGTGGTAGAGGACAAACCGTCCTCCAAAGCCGGCAAAGGCAAGACCTCTA
AGGAGCCCAAAGCCAAGAAAGCCGCTGCTCCGAGGAAGCCTAGAAGCCCT
CCCTCTCATCCTCCGTATGAAGAGATGATTAAGGATGCAATTGTTACTTT
GAAAGAGAAGACCGGTTCGAGTCAGTATGCAATTGCCAAATTTATTGAGG
AGAAGCACAAGCAGTTGCCACCCAACTTTAAGAAGCTGTTGCTGTTTCAT
TTGAAGAAGCTTGTGGGTTCCGGAAAGCTCGTGAAGGTTAAGGGTTCCTT
CAAGCTTCCATCGGCTAGGGCTGCCGTTTCTAAGCCGGCTGCATCTGTTC
CTGCTTCTCCGGCTAAGAAGAAGAAGCCGGTTGCTGCTGGTAAGGCCAAA
ACTAAGGCGGCGCCCTCCAAGGCCAAAGCTCCACCTAAGGCTAAGGCTAA
GGCACCAGCTAAAGCTCCGGCCAAGGCTAAGCCAGCTGCTAAACCCAAAG
CCAAGCCGGCTGCCAAGACTAAGGCGGTGGCTGCCAAGACTAAAGCGGCT
CCGGCTAAGGCTAAGCCTGCTGCCAAACCGAAAGCTGCAACAACCAAGAC
GAAGGTGACCGCCAAGCCGAAGCCAAAGGAGAAGCCCGCGAAGGTTGCGA
GGACGTCGACCAGGACATCTCCAGGGAAAAGAGCGGCTGCTCCCAAGCCG
GCTCCAAAAAAGCTCCGGCTGCCAGAAAGCTTCGG
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