FC877997

Overview
NameFC877997
Unique NameFC877997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8399 contig Ccv1_Contig8399:301..1055. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_TOBAC (Ribonucleoside-diphosphate reductase small chain OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 1.589e-114
Identity = 203/240 (84.58%), Postives = 215/240 (89.58%), Query Frame = 2
Query:   35 MPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            MP IPEEPL   +PDRF +FPI YP+IWEMY+KA ASFWTAEEV LS D   WE+LT  E+HFITHVLA FA SDGIVLENLA RFMKEVQV+EARAFYGFQIAIENIHSEMYSLLLE+YIK+SDEKSRLFRA ET PCV KKA WAL WIDGSETFAERL+AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR KL+EERV GIV +AVEIEREFV
Sbjct:    1 MPLIPEEPLLASSPDRFCMFPIQYPQIWEMYKKALASFWTAEEVDLSSDTRHWETLTPGERHFITHVLAFFAASDGIVLENLAGRFMKEVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSRLFRAVETNPCVEKKAKWALRWIDGSETFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLTEERVKGIVADAVEIEREFV 240          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2C_ARATH (Ribonucleoside-diphosphate reductase small chain C OS=Arabidopsis thaliana GN=TSO2 PE=2 SV=1)

HSP 1 Score: 401.364 bits (1030), Expect = 2.805e-111
Identity = 196/241 (81.33%), Postives = 215/241 (89.21%), Query Frame = 2
Query:   35 MPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWE-SLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            MPS+PEEPL TP PDRF +FPI YP+IWEMY+KAEASFWTAEEV LSQD   WE SL   E+HFI HVLA FA SDGIVLENLA+RFM +VQVSEARAFYGFQIAIENIHSEMYSLLL+TYIK++ E+  LFRA ET+PCVAKKA WA+ WIDGS+TFAER+IAFACVEGIFFSGSFC+IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY+LL+ KLSEERV  IV +AVEIEREFV
Sbjct:    1 MPSMPEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFIKHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVAKKAQWAMKWIDGSQTFAERIIAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSEERVKSIVCDAVEIEREFV 241          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2B_ARATH (Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 3.429e-109
Identity = 188/241 (78.01%), Postives = 214/241 (88.80%), Query Frame = 2
Query:   35 MPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWE-SLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            MPS+PEEP+ TP PDRF +FPI YP+IWEMY+KAEASFWTAEEV LSQD   WE SLT  E+HFI HVLA FA SDGIVLENL+ RFM +VQ+SEARAFYGFQIAIENIHSEMYSLLL+TYIK++ E+  LFRA ET+PCV KKA+WA+ WI+GS++FAER++AFACVEGIFFSGSFC+IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL+YSLLR KL E+R+  IV +AVEIEREFV
Sbjct:    1 MPSMPEEPILTPTPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLTNDERHFIKHVLAFFAASDGIVLENLSTRFMSDVQISEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVTKKAEWAMKWINGSQSFAERIVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIYSLLRTKLDEDRLKAIVCDAVEIEREFV 241          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2A_ARATH (Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2)

HSP 1 Score: 364.385 bits (934), Expect = 3.800e-100
Identity = 178/235 (75.74%), Postives = 198/235 (84.26%), Query Frame = 2
Query:   50 EEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            EEPL      RF +FPI Y  IWEMY+KAEASFWTAEEV LS D+ QWE+LT  EKHFI+H+LA FA SDGIVLENLAARF+ +VQV EARAFYGFQIA+ENIHSEMYSLLLET+IK+S EK RLF A ET+PC++KKA W L+WI    +FA RL+AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL+ +L  E+V  IV EAVEIE EFV
Sbjct:   18 EEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEALTDSEKHFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFIKDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPLEKVYQIVHEAVEIETEFV 252          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_MESAU (Ribonucleoside-diphosphate reductase subunit M2 OS=Mesocricetus auratus GN=RRM2 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.315e-94
Identity = 167/245 (68.16%), Postives = 199/245 (81.22%), Query Frame = 2
Query:   23 KITKMPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            K++  PS+ +EPL   NP RF +FPI Y +IW+MY+KAEASFWTAEEV LS+D+  WE+L   E+HFI+HVLA FA SDGIV ENL  RF +EVQV+EAR FYGFQIA+ENIHSEMYSLL++TYIK+S E+  LF A ET+PCV KKADWAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L +K SE+RV  I+  AV IE+EF+
Sbjct:   61 KVSTNPSVEDEPLLRENPRRFVVFPIEYHDIWKMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEQRVQEIITNAVRIEQEFL 305          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_RAT (Ribonucleoside-diphosphate reductase subunit M2 OS=Rattus norvegicus GN=Rrm2 PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.184e-93
Identity = 169/248 (68.15%), Postives = 198/248 (79.84%), Query Frame = 2
Query:   14 LTLKITKMPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            L  K    PSI EEPL   NP RF +FPI Y +IW+MY+KAEASFWTAEEV LS+D+  WE+L   E+HFI+HVLA FA SDGIV ENL  RF +EVQV+EAR FYGFQIA+ENIHSEMYSLL++TYIK+S E+  LF A ET+PCV KKADWAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L +K SE+RV  I+  +V IE+EF+
Sbjct:   58 LESKAPTKPSIEEEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEQRVKEIITNSVRIEQEFL 305          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_DANRE (Ribonucleoside-diphosphate reductase subunit M2 OS=Danio rerio GN=rrm2 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.638e-93
Identity = 168/242 (69.42%), Postives = 197/242 (81.40%), Query Frame = 2
Query:   32 KMPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            K  ++ EEPL   NP RF +FPI Y +IW+MY+KAEASFWTAEEV LS+DL  W+SL   E++FI+HVLA FA SDGIV ENL  RF +EVQV+EAR FYGFQIA+ENIHSEMYSLL++TYIK+S E+  LF A ET+PCV KKADWALNWI D +  + ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L NK SEE V  I+  AVEIE+EF+
Sbjct:   60 KKGAVEEEPLLKENPHRFVIFPIQYHDIWQMYKKAEASFWTAEEVDLSKDLQHWDSLKDEERYFISHVLAFFAASDGIVNENLVERFTQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKEREFLFNAIETMPCVKKKADWALNWIGDKNARYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLINKPSEETVKKIIMNAVEIEQEFL 301          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_MOUSE (Ribonucleoside-diphosphate reductase subunit M2 OS=Mus musculus GN=Rrm2 PE=1 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.710e-92
Identity = 166/248 (66.94%), Postives = 197/248 (79.44%), Query Frame = 2
Query:   14 LTLKITKMPSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            L  K    PS+ +EPL   NP RF +FPI Y +IW+MY+KAEASFWTAEEV LS+D+  WE+L   E+HFI+HVLA FA SDGIV ENL  RF +EVQV+EAR FYGFQIA+ENIHSEMYSLL++TYIK+  E+  LF A ET+PCV KKADWAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L +K +E+RV  I+  AV IE+EF+
Sbjct:   58 LESKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFL 305          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_SPISO (Ribonucleoside-diphosphate reductase small chain OS=Spisula solidissima PE=2 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 4.975e-92
Identity = 164/235 (69.79%), Postives = 194/235 (82.55%), Query Frame = 2
Query:   53 EPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            EPL   NP RF + PI Y +IW+MY+KAEASFWTAEEV LS+D+  WESL   EKHFI+HVLA FA SDGIV ENL  RF KEVQV+EAR FYGFQIA+ENIHSEMYSLL++TYIK+  E+  LF A ET+PCV +KADWA+ WI D S ++AER++AFA VEGIFFSGSF +IFWLKKRG+MPGLTFSNELISRDEGLHCDFACL++S L NK S+ER+  I+ EAV+IE+ F+
Sbjct:   62 EPLLADNPRRFVVLPIQYHDIWKMYKKAEASFWTAEEVDLSKDMAHWESLKKEEKHFISHVLAFFAASDGIVNENLVERFSKEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPQERDFLFNAIETMPCVKEKADWAMRWINDDSSSYAERVVAFAAVEGIFFSGSFASIFWLKKRGIMPGLTFSNELISRDEGLHCDFACLMFSHLVNKPSQERIHQIIDEAVKIEQVFL 296          
BLAST of FC877997 vs. ExPASy Swiss-Prot
Match: RIR2_HUMAN (Ribonucleoside-diphosphate reductase subunit M2 OS=Homo sapiens GN=RRM2 PE=1 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 4.975e-92
Identity = 164/240 (68.33%), Postives = 194/240 (80.83%), Query Frame = 2
Query:   38 PSIPEEPLPTPNPDRFRLFPIPYPEIWEMYQKAEASFWTAEEVHLSQDLPQWESLTAHEKHFITHVLALFAPSDGIVLENLAARFMKEVQVSEARAFYGFQIAIENIHSEMYSLLLETYIKNSDEKSRLFRAFETVPCVAKKADWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRNKLSEERVMGIVKEAVEIEREFV 754
            P + +EPL   NP RF +FPI Y +IW+MY+KAEASFWTAEEV LS+D+  WESL   E++FI+HVLA FA SDGIV ENL  RF +EVQ++EAR FYGFQIA+ENIHSEMYSLL++TYIK+  E+  LF A ET+PCV KKADWAL WI D   T+ ER++AFA VEGIFFSGSF +IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL++  L +K SEERV  I+  AV IE+EF+
Sbjct:   65 PGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFL 304          
The following BLAST results are available for this feature:
BLAST of FC877997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RIR2_TOBAC1.589e-11484.58Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2C_ARATH2.805e-11181.33Ribonucleoside-diphosphate reductase small chain C... [more]
RIR2B_ARATH3.429e-10978.01Putative ribonucleoside-diphosphate reductase smal... [more]
RIR2A_ARATH3.800e-10075.74Ribonucleoside-diphosphate reductase small chain A... [more]
RIR2_MESAU5.315e-9468.16Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_RAT1.184e-9368.15Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_DANRE2.638e-9369.42Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_MOUSE1.710e-9266.94Ribonucleoside-diphosphate reductase subunit M2 OS... [more]
RIR2_SPISO4.975e-9269.79Ribonucleoside-diphosphate reductase small chain O... [more]
RIR2_HUMAN4.975e-9268.33Ribonucleoside-diphosphate reductase subunit M2 OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA85CC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA85CC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877997 ID=FC877997; Name=FC877997; organism=Citrus clementina; type=EST; length=755bp
CCTAAACCTAGTATTAACCTTGAAAATTACCAAAATGCCCTCCATCCCCG
AAGAGCCCCTGCCAACCCCCAACCCCGACCGATTCCGCCTGTTTCCCATC
CCGTACCCGGAAATCTGGGAAATGTACCAGAAAGCCGAAGCTTCCTTTTG
GACGGCGGAGGAGGTCCACCTGTCCCAGGACCTCCCCCAGTGGGAATCCC
TAACCGCCCACGAGAAACACTTCATCACGCACGTGCTCGCCCTCTTCGCC
CCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGGTTCATGAAAGA
AGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATCG
AGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAA
AACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTG
CGTTGCCAAAAAGGCCGATTGGGCCCTAAATTGGATCGACGGCTCGGAGA
CATTCGCGGAGAGACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTC
TCGGGCAGTTTCTGCGCGATATTTTGGTTGAAAAAGCGCGGGTTAATGCC
GGGCCTAACCTTCTCGAACGAGCTAATCTCGCGAGATGAAGGACTCCACT
GCGATTTCGCGTGCTTGTTGTACAGCTTGCTGAGGAACAAATTAAGCGAG
GAGCGCGTGATGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAGTT
CGTGT
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