FC878002

Overview
NameFC878002
Unique NameFC878002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8274 contig Ccv1_Contig8274:171..1037. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2_RAT (Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.815e-67
Identity = 129/233 (55.36%), Postives = 156/233 (66.95%), Query Frame = 3
Query:  168 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            ++ F++ L QL V++ K                       LPE +NSPY  + FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ YPGAFNMTTGP HWELLQRARA DNQ+YVAT SPARDE+A YVAW HST+V P+
Sbjct:    1 MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEKIPG-----ESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVYPGAFNMTTGPAHWELLQRARAVDNQVYVATASPARDEKASYVAWGHSTVVDPW 228          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2_BOVIN (Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 9.006e-67
Identity = 127/230 (55.22%), Postives = 156/230 (67.83%), Query Frame = 3
Query:  177 FKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            F++ L QL V++ K                       LPE +NSPY    FP YAE I   GD   ST  LSEVA+   + ++GGSIPE+   +LYNTC VFG DG L+ KHRK+HLFDID+PGKITF ES++L+ G++ ++ DT   R+G+GICYDIRF ELA IY  RG  L+ YPGAFN+TTGP HWELLQR RA DNQ+YVAT SPARDE+A YVAW HST+V P+
Sbjct:    4 FRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEKIP--GD---STQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHLFDIDVPGKITFQESETLSPGDSFSLFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDEKASYVAWGHSTVVNPW 228          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2_HUMAN (Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.536e-66
Identity = 126/233 (54.08%), Postives = 156/233 (66.95%), Query Frame = 3
Query:  168 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            +T F++ L QL +++ K                       LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDID+PGKITF ESK+L+ G++ +  DT   R+G+GICYD+RF ELA IY  RG  L+ YPGAFN+TTGP HWELLQR+RA DNQ+YVAT SPARD++A YVAW HST+V P+
Sbjct:    1 MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKIPG-----ESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRSRAVDNQVYVATASPARDDKASYVAWGHSTVVNPW 228          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2_MOUSE (Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.422e-66
Identity = 126/233 (54.08%), Postives = 155/233 (66.52%), Query Frame = 3
Query:  168 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            ++ F++ L QL V++ K                       LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKITF ESK+L+ G++ +  DT   ++G+GICYD+RF ELA IY  RG  L+ YPGAFN+TTGP HWELLQRARA DNQ+YVAT SPARD++A YVAW HST+V P+
Sbjct:    1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPG-----ESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPW 228          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2A_XENLA (Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.837e-66
Identity = 126/233 (54.08%), Postives = 154/233 (66.09%), Query Frame = 3
Query:  168 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            + KFK+ L Q  V+  K                       LPE +NSPY    FP YAE I        ST +LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYDIRF ELA IY  +G  L+ YPGAFNMTTGP HWELLQRARA DNQ+YVAT SPARDE+A YVAW HST+V P+
Sbjct:    1 MAKFKLSLVQFLVSPVKSDNLNRACKLIKEAAQKGAQIVALPECFNSPYGTTYFPEYAEKIPG-----ESTELLSQVAKECGIYLIGGSIPEEDCGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDIRFAELAQIYANKGCQLLVYPGAFNMTTGPAHWELLQRARALDNQVYVATASPARDEKASYVAWGHSTIVSPW 228          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2_XENTR (Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.942e-65
Identity = 123/233 (52.79%), Postives = 153/233 (65.67%), Query Frame = 3
Query:  168 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            + KF++ L Q  V+  K                       LPE +NSPY    FP YAE I        ST  LS+VA+   I ++GGSIPE    +LYNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF ELA +Y  +G  L+ YPGAFNMTTGP HWELLQRARA DNQ+YVAT SPARDE+A YVAW HST+V P+
Sbjct:    1 MAKFRLSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEKIPG-----ESTERLSQVAKECGIYLIGGSIPEEDSGKLYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFETPYCKVGVGICYDIRFAELAQLYSKKGCQLLVYPGAFNMTTGPAHWELLQRARALDNQVYVATASPARDEKASYVAWGHSTIVSPW 228          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2B_XENLA (Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.942e-65
Identity = 123/233 (52.79%), Postives = 153/233 (65.67%), Query Frame = 3
Query:  168 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            + KF++ L Q  V+  K                       LPE +NSPY    FP YAE I        ST +LS+VA+   I ++GGSIPE    + YNTC VFG DG L+ KHRKIHLFDID+PGKI F ES++L+ G++ ++ DT   ++G+GICYD+RF ELA IY  +G  L+ YPGAFNMTTGP HWELLQRARA DNQ+YVAT SPARDE+A YVAW HST+V P+
Sbjct:    1 MAKFRLSLVQFLVSPVKSDNLNKACKLIKEAAQKGAQIVALPECFNSPYGTKYFPEYAEKIPG-----ESTELLSQVAKECGIYLIGGSIPEEDSGKFYNTCAVFGPDGTLLVKHRKIHLFDIDVPGKIRFQESETLSPGDSFSVFDTPYCKVGVGICYDMRFAELAQIYANKGCQLLVYPGAFNMTTGPAHWELLQRARALDNQVYVATASPARDEKASYVAWGHSTVVSPW 228          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2_PONAB (Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.464e-64
Identity = 124/233 (53.22%), Postives = 152/233 (65.24%), Query Frame = 3
Query:  168 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            +  F++ L QL +++                         LPE +NSPY    FP YAE I        ST  LSEVA+   I ++GGSIPE    +LYNTC VFG DG L+AK+RKIHLFDID+PGKITF ESK+L+ G++    DT   R+G+GICYD+RF ELA IY  RG  L+ YPGAFN+TTGP HWELLQR RA DNQ+YVAT SPARD++A YVAW HST+V P+
Sbjct:    1 MASFRLALIQLQISSINSDNVTRACSFIREAATQGAKIVSLPECFNSPYGTKYFPEYAEKIPG-----ESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFCTFDTYC-RVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDDKASYVAWGHSTVVNPW 227          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: NIT2_DANRE (Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.712e-63
Identity = 121/233 (51.93%), Postives = 152/233 (65.24%), Query Frame = 3
Query:  168 VTKFKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            ++KF++ + QL V+  K                       LPE +NSPY    F  YAE I        ST +LSE A+   I +VGGSIPE  G +LYNTC VFG DG L+  HRKIHLFDID+PGKI F ES++L+ G++ ++ +T   ++G+GICYDIRF ELA IY  +G  L+ YPGAFNMTTGP HWELLQR RA DNQ+YVAT SPARDE A YVAW HS+++ P+
Sbjct:    1 MSKFRLAVVQLHVSKIKADNLGRAQTLVKEAAGQGAKVVVLPECFNSPYGTGFFKEYAEKIPG-----ESTQVLSETAKKCGIYLVGGSIPEEDGGKLYNTCSVFGPDGTLLVTHRKIHLFDIDVPGKIRFQESETLSPGKSLSMFETPYCKVGVGICYDIRFAELAQIYAKKGCQLLVYPGAFNMTTGPAHWELLQRGRAVDNQVYVATASPARDETASYVAWGHSSVINPW 228          
BLAST of FC878002 vs. ExPASy Swiss-Prot
Match: YAUB_SCHPO (UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces pombe GN=SPAC26A3.11 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.346e-62
Identity = 122/230 (53.04%), Postives = 151/230 (65.65%), Query Frame = 3
Query:  177 FKVGLCQLSVTADKXXXXXXXXXXXXXXXXXXXXXXXLPEIWNSPYSNDSFPVYAEDIDAGGDASPSTAMLSEVARLLKITIVGGSIPERSGDRLYNTCCVFGSDGKLIAKHRKIHLFDIDIPGKITFIESKSLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYGARGAHLICYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDERAGYVAWXHSTLVGPF 866
            F++GL QL+ T DK                       LPEI+NSPY    F  YAE I+   ++SPS   LS +A+  K  + GGSIPER   +LYNT  VF   GKLIA HRKIHLFDIDIPG ++F ES SL+ G+  T+VDT+ G+ G+GICYDIRF ELAMI    G  ++ YPGAFN++TGPLHWELL RARA DN+++VA C+PARD  A Y +W HST+V PF
Sbjct:   44 FRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFNSPYGTGYFNQYAEPIE---ESSPSYQALSSMAKDTKTYLFGGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLFDIDIPGGVSFRESDSLSPGDAMTMVDTEYGKFGLGICYDIRFPELAMIAARNGCSVMIYPGAFNLSTGPLHWELLARARAVDNEMFVACCAPARDMNADYHSWGHSTVVDPF 270          
The following BLAST results are available for this feature:
BLAST of FC878002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NIT2_RAT1.815e-6755.36Omega-amidase NIT2 OS=Rattus norvegicus GN=Nit2 PE... [more]
NIT2_BOVIN9.006e-6755.22Omega-amidase NIT2 OS=Bos taurus GN=NIT2 PE=2 SV=1[more]
NIT2_HUMAN1.536e-6654.08Omega-amidase NIT2 OS=Homo sapiens GN=NIT2 PE=1 SV... [more]
NIT2_MOUSE3.422e-6654.08Omega-amidase NIT2 OS=Mus musculus GN=Nit2 PE=1 SV... [more]
NIT2A_XENLA5.837e-6654.08Omega-amidase NIT2-A OS=Xenopus laevis GN=nit2a PE... [more]
NIT2_XENTR4.942e-6552.79Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 P... [more]
NIT2B_XENLA4.942e-6552.79Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE... [more]
NIT2_PONAB5.464e-6453.22Omega-amidase NIT2 OS=Pongo abelii GN=NIT2 PE=3 SV... [more]
NIT2_DANRE2.712e-6351.93Omega-amidase NIT2 OS=Danio rerio GN=nit2 PE=2 SV=... [more]
YAUB_SCHPO1.346e-6253.04UPF0012 hydrolase C26A3.11 OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA73AG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA73AG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878002 ID=FC878002; Name=FC878002; organism=Citrus clementina; type=EST; length=867bp
CCCCTCTCTCTCGTTCCATATTTCGAGGAAAGGCTAAACCCGTCTTCCAA
TCTCCTCCTCTCATCCGCACACACTCGTCAAATCCAAATCCAAATCCAAT
CATGGCTTCCTCTTTCAAGCCCGAACAAGCCAGGGCCCCACCCGCCCTTC
CCTTGCCCACTCCCCCCGTCACCAAGTTTAAGGTTGGGCTTTGCCAATTG
TCAGTAACGGCTGACAAAGAAAGGAACATCGCTCATGCTCGTAGAGCCAT
TGAGGAGGCGGCTGAGAAAGGCGCCAAGCTCATTATTTTGCCTGAGATTT
GGAACAGTCCCTATTCGAATGACAGCTTCCCAGTTTATGCCGAAGACATT
GATGCTGGTGGTGATGCATCTCCTTCCACCGCCATGCTTTCTGAAGTTGC
TCGTCTTCTGAAGATCACTATAGTTGGCGGCTCTATTCCCGAACGTTCTG
GGGATCGATTGTACAATACTTGCTGCGTCTTTGGTTCTGATGGAAAACTG
ATAGCTAAGCACCGGAAGATACACCTTTTTGATATTGACATTCCCGGGAA
GATTACCTTTATAGAATCAAAGTCCCTTACAGCAGGGGAGACACCAACCA
TTGTGGACACAGATGTTGGGCGTATTGGAATAGGTATTTGTTATGATATT
CGGTTTCAGGAACTGGCAATGATATATGGAGCAAGAGGTGCTCACTTGAT
ATGCTATCCTGGGGCATTTAACATGACTACTGGGCCATTGCATTGGGAGT
TATTGCAGAGGGCAAGGGCCACAGATAATCAGTTGTACGTGGCAACTTGT
TCGCCTGCTCGAGATGAAAGAGCTGGCTATGTGGCCTGGNGGCACTCTAC
TCTTGTAGGACCATTTG
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