FC878003

Overview
NameFC878003
Unique NameFC878003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length849
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878003_ssr163 microsatellite FC878003_ssr163:163..177. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878003_ssr627 microsatellite FC878003_ssr627:627..641. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878003_ssr705 microsatellite FC878003_ssr705:705..722. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878003_ssr38 microsatellite FC878003_ssr38:38..49. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11658 contig Ccv1_Contig11658:101..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.006e-22
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 3
Query:  267 KKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            KKP+KDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHKSDGETIEWLLQQAE
Sbjct:   60 KKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAE 111          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.993e-22
Identity = 48/53 (90.57%), Postives = 53/53 (100.00%), Query Frame = 3
Query:  264 AKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            AK+P+KDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHK+DGETIEWLLQQAE
Sbjct:  148 AKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAE 200          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP23_ARATH (Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.517e-22
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 3
Query:  264 AKKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            AK+PSKDRH KVDGRGRRIRMPA+CAARVFQLTREL HKSDGETIEWLLQQAE
Sbjct:   51 AKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAE 103          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.897e-21
Identity = 48/52 (92.31%), Postives = 51/52 (98.08%), Query Frame = 3
Query:  267 KKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            K+ +KDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHKSDGETIEWLLQQAE
Sbjct:   57 KRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAE 108          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 3
Query:  264 AKKP------SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            AKKP      +KDRHTKVDGRGRRIRMPA+CAARVFQLTRELGHKSDGETIEWLLQQAE
Sbjct:  107 AKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAE 165          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 3
Query:  267 KKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            K PSKDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct:   28 KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 79          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 45/52 (86.54%), Postives = 50/52 (96.15%), Query Frame = 3
Query:  267 KKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            K P+KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE
Sbjct:   36 KPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 87          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 3
Query:  276 SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            +KDRHTKV+GRGRRIRMPA+CAARVFQLTRELGHKSDGETIEWLLQQAE
Sbjct:   52 TKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAE 100          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 3
Query:  267 KKPSKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            +  +KDRHTKV+GRGRRIRMPA+CAAR+FQLTRELGHKSDGETI+WLLQQAE
Sbjct:   75 RSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAE 126          
BLAST of FC878003 vs. ExPASy Swiss-Prot
Match: TCP19_ARATH (Transcription factor TCP19 OS=Arabidopsis thaliana GN=TCP19 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 3
Query:  267 KKP-SKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAE 422
            K+P SKDRHTKV+GRGRRIRMPA CAARVFQLTRELGHKSDGETI WLL++AE
Sbjct:   53 KRPTSKDRHTKVEGRGRRIRMPAGCAARVFQLTRELGHKSDGETIRWLLERAE 105          
The following BLAST results are available for this feature:
BLAST of FC878003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCP22_ARATH1.006e-2296.15Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
PCF3_ORYSJ4.993e-2290.57Transcription factor PCF3 OS=Oryza sativa subsp. j... [more]
TCP23_ARATH8.517e-2292.45Transcription factor TCP23 OS=Arabidopsis thaliana... [more]
TCP8_ARATH1.897e-2192.31Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP14_ARATH3.236e-2186.44Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
TCP21_ARATH9.416e-2188.46Transcription factor TCP21 OS=Arabidopsis thaliana... [more]
TCP7_ARATH2.098e-2086.54Transcription factor TCP7 OS=Arabidopsis thaliana ... [more]
TCP15_ARATH2.740e-2093.88Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP20_ARATH6.104e-2084.62Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP19_ARATH5.167e-1986.79Transcription factor TCP19 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE03RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878003 ID=FC878003; Name=FC878003; organism=Citrus clementina; type=EST; length=849bp
CTCACCTACTCTTCTTTCTCCTCTCTCACACACCAGTCAAACAAACAAAC
CTCAAAACCATCATTTTTTGTTTGCCAAGAAACTGATCAAAGAAAATTTA
TATATGATCCTTCGCATCTGGGAAAATTGAATAAGCAAAACCCCAGATGA
AAATAATGGAACACAACAACAACAACAACCAAACCACAGCGTCATCAAAT
AATTCAAACCCTAATACAACAACAACGACAACAAGTACAGTTTCAGCAGC
TACCAAAACCCTAGCCAAGAAGCCGTCAAAGGACCGGCACACCAAAGTGG
ACGGCCGGGGGCGACGGATACGGATGCCGGCAGTATGTGCAGCTAGGGTT
TTTCAGTTAACAAGAGAATTAGGGCACAAATCAGATGGTGAAACCATTGA
GTGGCTGCTGCAACAAGCTGAGCCTGCCATTATAGCTACCACGGGCACCG
GCACCATTCCTGCTAATTTTTCAACTCTTAATATCTCTTTACGTAGCAGT
GGCAGCTCCTCTCTTTCAGCGCCCGCTTCTAAATCATCACTCCACAGCGC
CGCCGCTGCTTTGGCACTTTACAACAACACCACCAACAACAACATTAATA
GTGGAGGTTTTTTTTGTGGGGCGTTTCAGCAGCAGCAGCAGCAACAATTG
TTGTATAATATTCATGAAACAGCGGCAGCAACAGCAAGTGCTTGTGCTTC
TTCATCTTCTTCTTCTTCTTCTGCTTCAGCAGCTGCTGCCGTGGCGGCAC
CTGCAGCTGCTATGTGGGCAGTGGCACCGGCTGCTGCTTCTAATGGGGGC
AACGGCTTCTGGATGCTACCGGAGGCACAGATGTGGACTTTTCCCGCTC
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